MCB Accepts, published online ahead of print on 11 November 2013 Mol. Cell. Biol. doi:10.1128/MCB.01232-13 Copyright © 2013, American Society for Microbiology. All Rights Reserved.
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Pknox1/Prep1 regulates mitochondrial oxidative
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phosphorylation components in skeletal muscle
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Timo Kanzleiter #1, Michaela Rath1, Dmitry Penkov2,3, Dmytro Puchkov4, Nadja Schulz1,
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Francesco Blasi2, Annette Schürmann1
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1: Department of Experimental Diabetology, German Institute of Human Nutrition, Potsdam-
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Rehbruecke; 2: IFOM (Foundation FIRC Institute of Molecular Oncology), Milano; 3: Moscow
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State University, Moscow, 4: Leibniz Institut für Molekulare Pharmakologie (FMP), Berlin
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Running title: Prep1 regulates OXPHOS components #Address correspondence to Timo Kanzleiter,
[email protected] 11
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Abstract
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The homeodomain transcription factor Prep1 was previously shown to regulate insulin
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sensitivity. Our aim was to study the specific role of Prep1 for the regulation of energy
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metabolism in skeletal muscle. Muscle specific ablation of Prep1 resulted in increased
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expression of respiratory chain subunits. This finding was consistent with an increase in
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mitochondrial enzyme activity without affecting mitochondrial volume fraction as assessed
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by electron microscopy. Metabolic phenotyping revealed no differences in daily energy
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expenditure or body composition. However, during treadmill exercise challenge Prep1
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ablation resulted in a higher maximal oxidative capacity and better endurance. Elevated
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PGC-1 expression was identified as a cause for increased mitochondrial capacity in Prep1
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ablated mice. Prep1 stabilizes p160 Mybbp1a, a known inhibitor of PGC-1 activity. Thereby,
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P160 protein levels were significantly lower in muscle of Prep1 ablated mice. By a ChIPseq
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approach PREP1 binding sites in genes encoding mitochondrial components (e.g. Ndufs2)
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were identified that might be responsible for elevated OXPHOS proteins in the muscle of
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Prep1 nullmutants. These results suggest that Prep1 exhibits additional direct effects on
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regulation of mitochondrial proteins. We therefore conclude that Prep1 is a regulator of
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oxidative phosphorylation components via direct and indirect mechanisms.
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Introduction
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Obesity can give rise to a multitude of pathological conditions collectively referred to as the
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metabolic syndrome. The underlying key metabolic defect is insulin resistance, which can be
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caused by ectopic fat storage mainly in muscle and liver (1). Skeletal muscle is the major site
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of oxidative glucose and lipid metabolism and dysregulation of either of these metabolic
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pathways can contribute to the development of metabolic diseases such as type 2 diabetes
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and cardiovascular complications (2).
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The Pknox1 gene encodes the homeodomain transcription factor Prep1 that belongs to the
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family of TALE (three-amino acid loop extension) proteins (3, 4). It dimerizes with Pbx
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proteins to increase its target specificity (5–7). Prep1, as most homeodomain factors, is also
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involved in the regulation of development and consequently deletion of Prep1 leads to
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embryonic lethality. However, Prep1 hypomorphic mice (Prep1i/i), which express about 2% of
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Prep1 mRNA have a survival rate of 25% whereas the remaining 75% suffers intra-uterine
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death with developmental defects in hematopoesis, oculogenesis and angiogenesis (8).
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Using the Prep1 hypomorphic mouse model, it was recently reported that Prep1 is involved
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in the regulation of glucose metabolism (9). Prep1-hypomorphic mice were shown to be
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more insulin sensitive than wildtype animals and it was concluded that this was due to
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increased GLUT4-mediated glucose uptake in skeletal muscle (9). Prep1-hypomorphic have
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other phenotypes relevant to systemic glucose metabolism such as changes in beta-cell
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proliferation (9), enhanced hepatic insulin responsiveness and reduced hepatic glucose
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output (10). Therefore we ablated Prep1 specifically in skeletal muscle in order to test the
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hypothesis that Prep1 is involved in the regulation of energy metabolism in skeletal muscle.
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Material and Methods
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Animal studies
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Animals were kept in a temperature-controlled room (22±1°C) on a 12 h light/dark cycle with
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free access to food and water. All animal studies were conducted in accordance with the NIH
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guidelines for the care and use of laboratory animals, and all experiments were approved by
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the ethics committee of the State Agency of Environment, Health and Consumer Protection
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(State of Brandenburg, Germany).
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Generation of Prep1-hypomorphic and Prep1-loxP mice was described elsewhere (8, 11).
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Briefly, Prep1-hypomorphic mice have a retroviral vector (VICTR45) inserted into intron1 and
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Prep1-loxP mice have loxP sites flanking exon 6 and 7 of the Prep1 gene. Genotyping of the
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mice was performed by genomic PCR on DNA isolated from tail biopsies (Fig1A; Primers A-E).
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Primer sequences used were A: GGCACATCGTGAAGTTGGG, B: GCAGGTTAGAAAGGGAGGAC,
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C: CCAAGGGCAGTAAGAGAAGCTCTGCAG, D: CAAAATGGCGTTACTTAAGCTAGCTTGCC, E:
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GGAGTGCCAACCATGTTAAGAAGAAGTCCC . All three mouse lines (Prep1f/f, Prep1i/i and MCK-
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Cre) were backcrossed to C57BL/6 mice for at least ten generations to minimize variation
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due to differences in genetic background.
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Body composition was weekly analyzed by NMR (nuclear magnetic resonance; Minispec
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LF50, Bruker Biospin Corporation; Billerica, USA). Energy expenditure and respiratory
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quotient was measured by indirect calorimetry as described elsewhere (12).
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For assessment of glucose tolerance animals were fasted for 6h and then received
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intraperitoneal injection of 2mg/g body weight glucose. For insulin tolerance tests (ITT) food
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was withdrawn for 1 hour and then mice received 0.75mU/g body weight insulin ip
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(Actrapid, Novo Nordisk, Mainz, Germany). Blood sugar was measured in blood sampled
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from the tail 15, 30, 60 and 120 (glucose tolerance only) minutes after injection. For random
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blood glucose measurements animals were measured in the morning without food
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withdrawal.
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The maximal oxidative capacity and endurance of the mice was measured on an airtight
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metabolic treadmill (Columbus Instruments, Columbus, USA) connected to an Oxymax 4
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oxygen and carbon dioxide analyzer (Columbus Instruments, Columbus, USA). The animals
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were running on a 20° incline and the treadmill speed was increased by 2m/min every
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2 minutes. The treadmill was stopped either when (a) the mice refused to run any further
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and remained on the shock grid for more than 5 seconds, (b) if the oxygen consumption did
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not increase any further after increase of the treadmill speed or (c) the respiratory quotient
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rose rapidly over 1 indicating anaerobic conditions.
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Mitochondrial properties
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Mitochondrial density was assessed by qPCR amplification of genomic DNA (glucagon) and
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mitochondrial DNA (cytochrome b) in isolated DNA from tibialis anterior muscle. The ratio of
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relative abundance values between mtDNA and genomic DNA was used as an indicator of
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mitochondrial density.
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For measurement of citrase synthase activity frozen muscle samples were homogenized in
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Tris-EDTA buffer (pH=7.4) and cleared supernatant after centrifugation was used for
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spectrophotometric assay. The conversion rate of acetyl-CoA and oxaloacetate to citrate and
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CoA-SH by citrate synthase is proportional to the coupled reaction of CoA-SH and DTNB
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(5,5 -Dithiobis(2-nitrobenzoic acid); Sigma Aldrich) to NTB (2-nitro-5-thiobenzoate), which
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was measured at 412 nm.
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RNA and protein analysis
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For cells and tissue samples RNA was isolated according to the manufacturer's instructions
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using TRI-reagent (Sigma Aldrich). RNA integrity was measured on LabChips in an Agilent
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Bioanalyzer and concentration was determined spectrophotometrically using a Nanodrop
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spectrophotometer (Thermo Scientific). For conversion into cDNA random primers and the
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cDNA synthesis kit from Qiagen were used. Quantitative real time PCR was performed on 5
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Roche Lightcycler 480 using gene specific primers and corresponding UPL Probes (Roche)
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(Table S1). For muscle samples the eukaryotic translation elongation factor 2 (Eef2) was used
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as endogenous control. Transcriptional profilling of muscle samples were performed on
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Agilent 4x44k whole genome microarrays by Source (Berlin). Array results were analyzed by
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gene set enrichment using the MetaCore database (Thomson Reuters).
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For immunoblot analysis frozen muscle samples were powdered and solubilized in
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radioimmunoprecipitation (RIPA) buffer supplemented with protease and phosphatase
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inhibitors (Roche). Protein concentration was measured in cleared supernatants using the
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BCA assay (Pierce). Protein, 30 µg, was diluted in Laemmli SDS buffer and separated on an
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SDS gel. After transfer to a polyvinylidene fluoride (PVDF) membrane, antibodies against
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Prep1 (sc-6245; Santa Cruz), PGC-1
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(Ambion), alpha-tubulin (Sigma Aldrich) and MitoProfile Total OXPHOS Rodent WB Antibody
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Cocktail (MitoSciences) were used for the immunodetection of respective proteins.
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Electron microscopy
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Mice were transcardially perfused with 2% paraformaldfehyde/2,5% glutaraldehyde. Tibialis
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anterior (TA) muscles were isolated and postfixed in the same fixative for 1 day. TA muscles
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were washed and cut longitudinally to stripes of 0.5 mm in thickness. Following osmification
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with 2% osmium tetroxide and 1% uranyl acetate en bloc staining tissue was routinely
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dehydrated in methanol gradient solutions and embedded in Epoxy resin. After
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polymerization median regions of the muscle were trimmed for subsequent ultramicroscopic
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analysis. Images were taken at Technai transmission electron microscope at x3500
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magnification using Gatan CCD camera. Multiple images were combined in order to
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reconstruct an area of
(Cell signalling), p160 Mybp1 (Invitrogen), Gapdh
16 by 16 µm per each muscle fibre analysed. Images from 25 6
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individual muscle fibers and 3 animals per genotype were analysed. Mitochondrial volume
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fraction was estimated by superimposing a grid over an image of muscle fibre and getting a
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ratio of crossings targeting mitochondria over total number of crossing targeting a muscle
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fibre.
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ChIP assay
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ChIPs were performed using standard methods as described elsewhere (7) on differentiated
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C2C12 myotubes. We used anti-Prep1 antibody for immunoprecipitation of sheared
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chromatin fragments. Enrichment for Prep1 binding in immunoprecipitated chromatin was
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tested by standard endpoint PCR (30cycles) as well as qPCR using SYBRgreen.
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Microarray Dataset
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Microarray data was deposited at Gene Expression Omnibus was assigned the accession
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number XXXX.
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Results
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Generation of double heterozygous Prep1 MCK-Cre-mice
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In a first approach, mice with loxP sites flanking exon 6 and 7 of the Prep1 gene (Prep1f/f;
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Fig1A; described in (11)) were crossed with MCK-Cre mice (13). The Cre expressing offspring
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had Prep1 expression in skeletal muscle at a level of about 50% as compared to the non-Cre
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expressing mice (data not shown). In order to increase the efficiency of Prep1 deletion we
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combined the Prep1 flox MCK-Cre mice with Prep1 hypomorphic mice (Prep1i/i; Fig1A (8))
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and crossed Prep1i/+ with heterozygous MCK-Cre mice, and the resulting Prep1i/+ Cre/+ with
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Prep1f/f mice. Double heterozygous Prep1f/i
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Prep1
SM
Cre/+
offspring (from here on referred to as
) was used as a model for Prep1 ablation and compared to Prep1f/+ +/+ mice (referred 7
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to as Prep1f/+; Fig1B). Prep1
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of Prep1 mRNA expression in skeletal muscle as compared with Prep1f/+ control mice (Fig1C).
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PREP1 protein levels were significantly reduced to about 60% of Prep1f/+ control mice
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(Fig1D). Since the MCK promoter is also active in heart we studied the expression of Prep1 in
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this organ and detected a 45% reduction in Prep1
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Prep1 is a negative regulator of respiratory chain subunits
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In order to identify target genes that are affected by Prep1 ablation transcriptional profiling
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was performed. Therefore, isolated RNA from tibialis muscle of eight week old male
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Prep1
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differentially expressed genes (p