MCB Accepts, published online ahead of print on 11 November 2013 Mol. Cell. Biol. doi:10.1128/MCB.01232-13 Copyright © 2013, American Society for Microbiology. All Rights Reserved.

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Pknox1/Prep1 regulates mitochondrial oxidative

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phosphorylation components in skeletal muscle

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Timo Kanzleiter #1, Michaela Rath1, Dmitry Penkov2,3, Dmytro Puchkov4, Nadja Schulz1,

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Francesco Blasi2, Annette Schürmann1

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1: Department of Experimental Diabetology, German Institute of Human Nutrition, Potsdam-

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Rehbruecke; 2: IFOM (Foundation FIRC Institute of Molecular Oncology), Milano; 3: Moscow

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State University, Moscow, 4: Leibniz Institut für Molekulare Pharmakologie (FMP), Berlin

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Running title: Prep1 regulates OXPHOS components #Address correspondence to Timo Kanzleiter, [email protected]

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Abstract

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The homeodomain transcription factor Prep1 was previously shown to regulate insulin

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sensitivity. Our aim was to study the specific role of Prep1 for the regulation of energy

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metabolism in skeletal muscle. Muscle specific ablation of Prep1 resulted in increased

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expression of respiratory chain subunits. This finding was consistent with an increase in

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mitochondrial enzyme activity without affecting mitochondrial volume fraction as assessed

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by electron microscopy. Metabolic phenotyping revealed no differences in daily energy

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expenditure or body composition. However, during treadmill exercise challenge Prep1

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ablation resulted in a higher maximal oxidative capacity and better endurance. Elevated

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PGC-1 expression was identified as a cause for increased mitochondrial capacity in Prep1

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ablated mice. Prep1 stabilizes p160 Mybbp1a, a known inhibitor of PGC-1 activity. Thereby,

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P160 protein levels were significantly lower in muscle of Prep1 ablated mice. By a ChIPseq

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approach PREP1 binding sites in genes encoding mitochondrial components (e.g. Ndufs2)

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were identified that might be responsible for elevated OXPHOS proteins in the muscle of

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Prep1 nullmutants. These results suggest that Prep1 exhibits additional direct effects on

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regulation of mitochondrial proteins. We therefore conclude that Prep1 is a regulator of

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oxidative phosphorylation components via direct and indirect mechanisms.

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Introduction

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Obesity can give rise to a multitude of pathological conditions collectively referred to as the

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metabolic syndrome. The underlying key metabolic defect is insulin resistance, which can be

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caused by ectopic fat storage mainly in muscle and liver (1). Skeletal muscle is the major site

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of oxidative glucose and lipid metabolism and dysregulation of either of these metabolic

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pathways can contribute to the development of metabolic diseases such as type 2 diabetes

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and cardiovascular complications (2).

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The Pknox1 gene encodes the homeodomain transcription factor Prep1 that belongs to the

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family of TALE (three-amino acid loop extension) proteins (3, 4). It dimerizes with Pbx

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proteins to increase its target specificity (5–7). Prep1, as most homeodomain factors, is also

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involved in the regulation of development and consequently deletion of Prep1 leads to

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embryonic lethality. However, Prep1 hypomorphic mice (Prep1i/i), which express about 2% of

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Prep1 mRNA have a survival rate of 25% whereas the remaining 75% suffers intra-uterine

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death with developmental defects in hematopoesis, oculogenesis and angiogenesis (8).

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Using the Prep1 hypomorphic mouse model, it was recently reported that Prep1 is involved

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in the regulation of glucose metabolism (9). Prep1-hypomorphic mice were shown to be

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more insulin sensitive than wildtype animals and it was concluded that this was due to

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increased GLUT4-mediated glucose uptake in skeletal muscle (9). Prep1-hypomorphic have

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other phenotypes relevant to systemic glucose metabolism such as changes in beta-cell

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proliferation (9), enhanced hepatic insulin responsiveness and reduced hepatic glucose

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output (10). Therefore we ablated Prep1 specifically in skeletal muscle in order to test the

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hypothesis that Prep1 is involved in the regulation of energy metabolism in skeletal muscle.

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Material and Methods

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Animal studies

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Animals were kept in a temperature-controlled room (22±1°C) on a 12 h light/dark cycle with

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free access to food and water. All animal studies were conducted in accordance with the NIH

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guidelines for the care and use of laboratory animals, and all experiments were approved by

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the ethics committee of the State Agency of Environment, Health and Consumer Protection

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(State of Brandenburg, Germany).

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Generation of Prep1-hypomorphic and Prep1-loxP mice was described elsewhere (8, 11).

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Briefly, Prep1-hypomorphic mice have a retroviral vector (VICTR45) inserted into intron1 and

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Prep1-loxP mice have loxP sites flanking exon 6 and 7 of the Prep1 gene. Genotyping of the

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mice was performed by genomic PCR on DNA isolated from tail biopsies (Fig1A; Primers A-E).

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Primer sequences used were A: GGCACATCGTGAAGTTGGG, B: GCAGGTTAGAAAGGGAGGAC,

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C: CCAAGGGCAGTAAGAGAAGCTCTGCAG, D: CAAAATGGCGTTACTTAAGCTAGCTTGCC, E:

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GGAGTGCCAACCATGTTAAGAAGAAGTCCC . All three mouse lines (Prep1f/f, Prep1i/i and MCK-

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Cre) were backcrossed to C57BL/6 mice for at least ten generations to minimize variation

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due to differences in genetic background.

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Body composition was weekly analyzed by NMR (nuclear magnetic resonance; Minispec

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LF50, Bruker Biospin Corporation; Billerica, USA). Energy expenditure and respiratory

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quotient was measured by indirect calorimetry as described elsewhere (12).

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For assessment of glucose tolerance animals were fasted for 6h and then received

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intraperitoneal injection of 2mg/g body weight glucose. For insulin tolerance tests (ITT) food

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was withdrawn for 1 hour and then mice received 0.75mU/g body weight insulin ip

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(Actrapid, Novo Nordisk, Mainz, Germany). Blood sugar was measured in blood sampled

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from the tail 15, 30, 60 and 120 (glucose tolerance only) minutes after injection. For random

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blood glucose measurements animals were measured in the morning without food

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withdrawal.

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The maximal oxidative capacity and endurance of the mice was measured on an airtight

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metabolic treadmill (Columbus Instruments, Columbus, USA) connected to an Oxymax 4

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oxygen and carbon dioxide analyzer (Columbus Instruments, Columbus, USA). The animals

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were running on a 20° incline and the treadmill speed was increased by 2m/min every

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2 minutes. The treadmill was stopped either when (a) the mice refused to run any further

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and remained on the shock grid for more than 5 seconds, (b) if the oxygen consumption did

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not increase any further after increase of the treadmill speed or (c) the respiratory quotient

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rose rapidly over 1 indicating anaerobic conditions.

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Mitochondrial properties

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Mitochondrial density was assessed by qPCR amplification of genomic DNA (glucagon) and

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mitochondrial DNA (cytochrome b) in isolated DNA from tibialis anterior muscle. The ratio of

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relative abundance values between mtDNA and genomic DNA was used as an indicator of

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mitochondrial density.

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For measurement of citrase synthase activity frozen muscle samples were homogenized in

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Tris-EDTA buffer (pH=7.4) and cleared supernatant after centrifugation was used for

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spectrophotometric assay. The conversion rate of acetyl-CoA and oxaloacetate to citrate and

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CoA-SH by citrate synthase is proportional to the coupled reaction of CoA-SH and DTNB

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(5,5 -Dithiobis(2-nitrobenzoic acid); Sigma Aldrich) to NTB (2-nitro-5-thiobenzoate), which

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was measured at 412 nm.

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RNA and protein analysis

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For cells and tissue samples RNA was isolated according to the manufacturer's instructions

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using TRI-reagent (Sigma Aldrich). RNA integrity was measured on LabChips in an Agilent

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Bioanalyzer and concentration was determined spectrophotometrically using a Nanodrop

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spectrophotometer (Thermo Scientific). For conversion into cDNA random primers and the

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cDNA synthesis kit from Qiagen were used. Quantitative real time PCR was performed on 5

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Roche Lightcycler 480 using gene specific primers and corresponding UPL Probes (Roche)

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(Table S1). For muscle samples the eukaryotic translation elongation factor 2 (Eef2) was used

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as endogenous control. Transcriptional profilling of muscle samples were performed on

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Agilent 4x44k whole genome microarrays by Source (Berlin). Array results were analyzed by

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gene set enrichment using the MetaCore database (Thomson Reuters).

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For immunoblot analysis frozen muscle samples were powdered and solubilized in

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radioimmunoprecipitation (RIPA) buffer supplemented with protease and phosphatase

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inhibitors (Roche). Protein concentration was measured in cleared supernatants using the

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BCA assay (Pierce). Protein, 30 µg, was diluted in Laemmli SDS buffer and separated on an

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SDS gel. After transfer to a polyvinylidene fluoride (PVDF) membrane, antibodies against

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Prep1 (sc-6245; Santa Cruz), PGC-1

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(Ambion), alpha-tubulin (Sigma Aldrich) and MitoProfile Total OXPHOS Rodent WB Antibody

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Cocktail (MitoSciences) were used for the immunodetection of respective proteins.

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Electron microscopy

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Mice were transcardially perfused with 2% paraformaldfehyde/2,5% glutaraldehyde. Tibialis

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anterior (TA) muscles were isolated and postfixed in the same fixative for 1 day. TA muscles

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were washed and cut longitudinally to stripes of 0.5 mm in thickness. Following osmification

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with 2% osmium tetroxide and 1% uranyl acetate en bloc staining tissue was routinely

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dehydrated in methanol gradient solutions and embedded in Epoxy resin. After

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polymerization median regions of the muscle were trimmed for subsequent ultramicroscopic

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analysis. Images were taken at Technai transmission electron microscope at x3500

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magnification using Gatan CCD camera. Multiple images were combined in order to

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reconstruct an area of

(Cell signalling), p160 Mybp1 (Invitrogen), Gapdh

16 by 16 µm per each muscle fibre analysed. Images from 25 6

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individual muscle fibers and 3 animals per genotype were analysed. Mitochondrial volume

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fraction was estimated by superimposing a grid over an image of muscle fibre and getting a

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ratio of crossings targeting mitochondria over total number of crossing targeting a muscle

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fibre.

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ChIP assay

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ChIPs were performed using standard methods as described elsewhere (7) on differentiated

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C2C12 myotubes. We used anti-Prep1 antibody for immunoprecipitation of sheared

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chromatin fragments. Enrichment for Prep1 binding in immunoprecipitated chromatin was

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tested by standard endpoint PCR (30cycles) as well as qPCR using SYBRgreen.

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Microarray Dataset

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Microarray data was deposited at Gene Expression Omnibus was assigned the accession

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number XXXX.

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Results

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Generation of double heterozygous Prep1 MCK-Cre-mice

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In a first approach, mice with loxP sites flanking exon 6 and 7 of the Prep1 gene (Prep1f/f;

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Fig1A; described in (11)) were crossed with MCK-Cre mice (13). The Cre expressing offspring

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had Prep1 expression in skeletal muscle at a level of about 50% as compared to the non-Cre

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expressing mice (data not shown). In order to increase the efficiency of Prep1 deletion we

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combined the Prep1 flox MCK-Cre mice with Prep1 hypomorphic mice (Prep1i/i; Fig1A (8))

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and crossed Prep1i/+ with heterozygous MCK-Cre mice, and the resulting Prep1i/+ Cre/+ with

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Prep1f/f mice. Double heterozygous Prep1f/i

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Prep1

SM

Cre/+

offspring (from here on referred to as

) was used as a model for Prep1 ablation and compared to Prep1f/+ +/+ mice (referred 7

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to as Prep1f/+; Fig1B). Prep1

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of Prep1 mRNA expression in skeletal muscle as compared with Prep1f/+ control mice (Fig1C).

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PREP1 protein levels were significantly reduced to about 60% of Prep1f/+ control mice

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(Fig1D). Since the MCK promoter is also active in heart we studied the expression of Prep1 in

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this organ and detected a 45% reduction in Prep1

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Prep1 is a negative regulator of respiratory chain subunits

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In order to identify target genes that are affected by Prep1 ablation transcriptional profiling

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was performed. Therefore, isolated RNA from tibialis muscle of eight week old male

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Prep1

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differentially expressed genes (p

Prep1 regulates mitochondrial oxidative phosphorylation components in skeletal muscle.

The homeodomain transcription factor Prep1 was previously shown to regulate insulin sensitivity. Our aim was to study the specific role of Prep1 for t...
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