Vol. 68, No. 3, 1976

BIOCHEMICAL

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

PEANUT (ARACHIS HYPOGAEA L.) SEED PROTEIN CHARACTERIZATION AND GENOTYPE SAMPLE CLASSIFICATION USING POLYACRYLAMIDE GEL ELECTROPHORESIS Clifton F. Savoy School of Science and Technology Florida A & M University Tallahassee, Florida 32307 Received

December

4,1975

Summary: Peanut seed protein has been characterized using polyacrylamide gel electrophoresis. The same general electropherogram pattern as regardsnumbers and kinds of protein components resolved was observed for all forty-five samples tested. Therefore, a universal standard electropherogram protein pattern appears to exist for all peanut seed samples and is presented. However, quantitative differences of individual proteins may occur. Depending on the genoBased on type examined, four to six components contain most of the protein. amounts of these major components present, all the samples can be separatedinto one of four groups. Classification by this electropherogram grouping method offers another criterion in determining genetic relatedness. INTRODUCTION Polyacrylamide in protein protein

the

seed (l-3),

well

and in

performed

to monitor

enzymes

electrophoresis

biochemistry, have

ployed

gel

as heat

the last

various

Data presented

(18,19)

phoreticallyresolved

proteinswas

in experimentation,

andseveralreports

In these, to

develop

"standards" difficult protein

Copyright All rights

seed protein

characterize

for

various

to clearly patterns,

reveal

distinguish and defined

(15-17) peanut

0 I976 by Academic Press, Inc. of reproduction in any form reserved.

between

specifically

cultivars

886

of electro-

this

was examinedinan

Overall,

to

serve

they

report

simply were

not

as

parameter

concern

patterns

patterns

15-17)

proteins.

the totalnumber

cultivars

comparisons.

standard

(11,

animportantcontrol

electrophoretic test

and content(4-11),

and varietal

usedas

has beenem-

and localizationwithin

experiments

that

of peanut

It

on the individual

often

of different

and

effects

literature

technique.

development

and environmental

used method

many researchers

this

fractionation

(12-16),

in this

using

protein

arachin/conarachin

and roasting

few years,

analyses

and characterize

and reactions

(PAGE) has become a widely

attempt as possible that

on the basis established.

point.

it

was

of the It

was

Vol. 68, No. 3, 1976

noted

though

partially tive

BIOCHEMICAL

that

some cultivars

distinguished

from

and quantitative

indicates

instead

laboratory

peanut type

would

that

be of great

value

using

the

grown

location

in another

in these

patterns

standard

one for

be

by minorqualita-

of thedifferent

pattern

each.

An anodic

experiments.

typePAGE

systemdoes

might

information molecules

to the breeder SLS PAGE system,

exist

for

all gel

Data recently

obtained

not separate

and resolve

(SLS)

and because present

cul-

non-detergent

the sodiumlaurylsulfate

of this

could

the patterns.

a universal

of protein

geographic

protein

as wellas

In light

and kinds

accumulated

in

this

components (20).

the numbers

that

however,

reveal

protein system

the same type

of a different

system was utilized, this

in one

of electropherogram

(15-17)

cultivars

grown

differences

The similarity tivars

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

in

detergent

more knowledge

in the mature

and laboratory

investigator,

and some major

findings

of

peanut

seed

data were are

reported.

Materials and Methods: Oil was removed from all seed samples by treatment (20 mg ground seed in 100 ml solvent) for 30 min in cold (4'C) 90%acetone containing ammonium hydroxide (50 pl/lOO ml). This process was repeated, and deoiled (stripped) sample was collected by sedimentation (20,OtOg for 30 min at 4 C), quick-frozen, lyophilized to dryness and stored at -20 C until analyzed. PAGE. Detergent (SLS) gel electrophoresis was performed in 10% gels utilizing a combination of the basic systems of Ornstein and Davis (21,22) and Shapiro, Vinu'ela and Maize1 (23) as refined by Weber and Osborn (24) and Grula and Savoy (25). The capability of this procedure toseparate and resolve plant proteins has recently been reported and the methodology given in detail (20). Molecular weight (MW) determinationof resolved components was accomplished as previously described (23,24). The proteins of known MW used were: bovineserum albumin, DNase, concanavalin A, lysozyme and cytochrome c. Calibrationcurves were constructed using protein concentrations varying from 2.5 to 10 pg/gel. Results pleted

and Discussion: in this

C37, Florunner,

Jenkins PS1539

Comparison twelve

genotypes

components

analyzed

present

consisted Jumbo,

C-l-29-l

market

except

seed proteinhave

Senegal41-95 C-3,

that for

types

all

performed were

P.I.

are

quantitative

887

alike

com-

in each study,

GA 98-3-5,GA157-1, 196623,

PS 1555 C-2-33-lD, protein

been

to monitorex-

examined

of thefollowing:

of the electropherogram revealed

of peanut

SLS PAGE testingwas

One or more different

and the genotypes

229553,

studies

laboratorywherein

perimentation.

P.I.

Several

P.I.

268771B,

Bassee

NC 4144 and NC 5

patterns

obtained

as regards

numbers

differences

GA

from

(26). these

and kinds

of some individualpro-

of

Vol. 68, No. 3,1976

BIOCHEMICAL

(35.500

AND BIOPHYSICAL

MW)

12 16 CO. 500

L~~~~~~~l~~~~~l~l~i~I 00 01 0.2 0.3

RESEARCH COMMUNICATIONS

04

0.5

Retardation

0.6

MW)

07

08

09

1.0

coefflclent

Figure 1. Electropherogram component pattern of stripped peanut protein meal (Jenkins Jumbo) after PAGE in the SLS system. Detection was accomplished using CBB G250, and 60 pg meal (contains 35 to 50 pg protein) were analyzed. Malachite Green in solvent served as the marker dye, and retardation coefficients were calculated by setting the migration distance (leading edge) of the dye to one.

teins.

Fig.

scribe

1 shows

the major

tain

at least

pattern

were

protein

determined

a few on the

same gel

are

The number

type mobility

lengths molecule

This vary during

logarithm

the majority

to 74,000

considered

detergent

uniquely

with

SLS PAGE is of a globular

all

reported

approximate

converts

daltons.

samples could

MW (27). also

molecule

888

is

linear

compo-

retardation with

since

the

detection.

of the expecteddeviation

proteins

with

These

be minimal for

into

The logarithm

linear

to con-

simultaneously,

of the resolved

most

to de-

ofproteinshavl

by comparing

because

properties

can be used

Each was found

may be insufficient

of up to 10% (24) and the structural

whose

with

of 13,000

molecules

it

of the others.

analyzing

column.

of some protein

the SLS solvent.

and

to be the same in eachgenotype

andelectrophoretically

The MWvalues

Jumbo,

components,

MW distribution

coefficients

quantity

of Jenkins

characteristics

twenty-one

ing an approximate nents

the pattern

respect with

components

in

rod-like

particles

of mobility

of this

to MW; whereas the square

of

the its

ra-

Vol. 68, No. 3, 1976

BIOCHEMICAL

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

TABLE I CLASSIFICATION OF PEANUT MARKET TYPES AND GENOTYPES BASED UPON THE PAGE ELECTROPHERCGRAM COMPONENT PATTERNS

Market Type and Genotype*

Growth

Group

Area

A

Classification B

C

D

Spanish Set

No. SPancross

1

Gi 116 Starr GK-19 comet GA 123 Spanhorns Tifspan Set No. 2 Spancross Starr

Tifton, Holland,

Set No. 1 GA 194R

Headland,

AL

Marianna, Headland, Stephenville, II

FL AL

GA VA

X

Runner

Set No. 2 Florunner II 11 ,I 1, II II 11 11 ,I II 11 II

Tifton, ,a Yoakum, Headland, Yoakum, Marianna, Headland, Marianna,

F439-16 11 11 0 ,, Early Runner II I,

X TX II

GA II TX AL TX FL AL FL

X X X X X X X

Virginia Jenkins

Jumbo

Gainesville,

FL

--Set No. 1 1C Fla 14 ?A 72R AU-2 Florigiant

Headland, 9, II 11

Set No. 2 Florigiant II 11 II 11 P.I. 31917&55 F393-6

Tifton, GA Yoakum, TX Stephenville, Marianna, FL Headland, AL

X

AL 1, 0, II

X X

TX X X

Uncertain Set

No.

1

Goldin*Set

Headland,

number

Jenkins

one and Goldin-

Judo

in

genotype

AL

X were

1973.

889

grown

in

1974,

number

two in

1971

and

Vol. 68, No. 3, 1976

dius

(24,28).

branching rod-like ably

BIOCHEMICAL

Thus,

mobility

or globular

mobility

characteristics

in the presence

However,preliminaryevidence and therefore

the similarity supports

allpeanutgenotypes.

To test

(1istedinTable

I,

and a peanut

Regardless

of these

(test

dard

pattern

previously

individual

proteins

four

for

of the

to six

protein,

acteristic

of the genotype

cially

into using

nents

group

ispoorin

proteins group bers

three

classifications 3, 5, 8-9,

and 16 are Group ponents.

C.

Genotypes

of this

that

analyzed.

season,

was also

the

obtained

for

a universal

patterns,

3, 5, 8-9,

stan-

differences

the twelve

of

group

components.

contain

5 and 12 are present

890

could

genotypes

be espe-

has

ofminor

led

compo-

showing

the resolved

2.

Descriptions

of

of this

Group

B.

5 is present,

numbers only

char-

columns

Genotypes

Number

seemingly

components,

of other

may be seen in Fig.

components.

most

reproducibility gel

noted

contain

genotypes

these

testing

Although

Group A.

was also

majorcomponentsis

Subsequent one.

it

12 and 16)

on theintensitiesof

12 and 16 as major major

or growing

Quantitative

genotype

representative

follow.

the only

Numbers

based

groups

additional

(APREA)were

genotypes

Moreover,

1).

5 and 12.

four

area

seed proteins.

of these

by subdividing

of these

for

at the 1975 meeting

Association

(numbers

(Fig.

a photograph,

geno-

exists

thirty-three

the conclusion

peanut

number

groups

numbers

to a fourth

twelve

andthe

pattern

obtained

growth

allow

twelve

though.

components

oftheseed

separated

data

of the

shown by AES or ARS coopera-

i/8160-16)

the twelve

peanut

may occur

In comparison only

for

These

does exist

area

one or more

characteristics.

standard

further,

and Education

that

patterns

possibility

genotype,

of SLS; mostprob-

globular

a universal

sample

type,

samples.

that

this

Research

described

may demonstrate

and growninthe

flour

of the market

each

idea

possess

indicates

in electropherogram the

of theAmericanPeanut

that

of molecular

whetherpeanutproteins

strongly

pattern

by extent

it isnotknown

Overall,

tors)

affected

At present

may be a glycoprotein

samples

is directly

RESEARCH COMMUNICATIONS

and size.

become rod-like.

types

AND BIOPHYSICAL

group

contain

Numbers but

the

3, 8-9,

in trace

amounts.

Group

12

amounts.

3. 8-9 and 16 as major

in trace

num-

D.

comThis

Vol. 68, No. 3, 1976

BIOCHEMICAL

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Ah

C

D

16-

Figure 2. Photographic representation of SLS PAGE columns containingresolved CBB G250 was used for detection. The four groups peanut protein components; of electropherogram characteristics are exemplified by the patterns of thefollowing cultivars: (A) Jenkins Jumbo, (B) GA 98-3-5 (Spanish market type), (C) Florunner and (D) AU-2 (Virginia market type).

group not

is

like

present

Group

in sufficient

To determine were

C except

if

categorized

into

Separation breeder

reveals

grouping istics possess

only

similarity.

groups

might

exist,

into

B.

market

It

listed

for

type

that

all

one,

genotypes

are were

891

these though of this found

listed

all

or is

in Table

the samples

groups

previously

descriptions

as Spanish

be stated

B characteristics

type

to be missing

the samples

It was found

the market

cannot

12 appears

electropherogram

those

Except

the Group

and Virginia

detection.

one of the four

that

of Group

for

analyzed.

of the samples

number

quantity

other

electrophoretically

component

I

can be described.

provided

by the

demonstrateelectropherogram possess

that

all

market

the

patterncharacter-

the genotypes type

to be evenly

since distributed

which

the Runner among

BIOCHEMKAL

Vol. 68, No. 3,1976

the B, C and D Groups. not

at first

lowing

appear

needs

the

APREA meeting, guishable the

group it

last

the peanut

Moreover,

often

been

This

geographic tics

locations

(examine

Table

I),

nificantly Starr,

tern

are

these

grouping

offers

data

however,

until

classification of the

Runner

As a result,

be a result are

but

analyzed.

grown

in different

group

characteris-

or Florigiant

and F439-16).

that

within

and Valen-

samegenotype

and those

Classi-

market

Virginia

could

of one genotype

would

shown Because

of Group

one sample

in

Groups B are

sig-

in each of

the

C

not be so classified.

that

classification

criterion

by electropherogram

to distinguish

in classifying evaluation

Runner,

has occurred.

similar

for

apparent

and probably

is possible

should

reveal

another

of importance

it

is

designation.

quite

emphasized lines

and cultivar

Florunner

In

varieties,

the same electropherogram

(Starr,

to these,

Overall,

Spanish,

Early

this.

of the past.

confusion botanical

supposedly

possess

and F439-16

that

why samples

characteristics

Florunner

unknown,

explain

do not

different

The extent

could

of the Spancross,

and others

and D pattern

type

samples

all

those

terms

as distin-

for

have been

terms

reached.

is not

subsequenthybrid

or Virginia

in PAGE group

a necessaryeventwhen would

for

fol-

at the 1975

may be accountable

designations

the

labeling

differences

information

the

germplasm

the

is

and breeding

methods

by the fact

used as both

nomenclature

Therefore,

reasons

nomenclature

complicated

and cultivars.

peanut

does

however,

a conclusion

genetics

that

Runner

types;

such

breeding

Thus,

between

incorrect

(29) Several

literature

cia have

on peanut

to the Spanish,

further

market before

hybridization

new cultivars.

is

types

consideration

used to be.

not be eqivalent

by electropherogramgrouping

in distinguishing

discussion

few decades,

fication

classification

was mentioned

as it

developing

not

useful

information During

Thus,

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

market

types

pat-

betweenpeanutgenotypes. and genotypes

has been made on strict

botanical

remains varieties

of A. hypogaea. ACKNOWLEDGEMENTS This study was supported by Grant 516-15-61fromthe United States DepartDr. A. .I. Norden ment of Agriculture --- Cooperative State Research Service. provided the Jenkins Jumbo seed, and Dr. R. 0. Hammons the other seed in addi-

892

Vol. 68, No. 3, 1976

BIOCHEMICAL

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

tion to a critique of the paper. Photography and technical assistance was given by Marvin extended to the Lord for overall support.

was performed by Dee Farrell, Felder. Gratitude is especially

REFERENCES 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29.

Neucere, N. J. and Ory, R. L. (1970) Plant Physiol, 45, 616-619. Cheng, J. P. (1974) J. Agr. Food Chem, 22, 723-724. Young, C. T., Young, T. G. and Cherry, J. P. (1974) Proc. Am. Peanut Res. Ed. Assoc. (PAPREA), 6, 8-16. Evans, W. J., Carney, W. B., Dechary, J. M. and Altschul, A. M. (1962) Arch. Biochem. Biophys, 96, 233-239. Tombs, M. P. (1965) Biochem. J, 96, 119-133. Dawson, R. (1968) Brit. J. Nutr, 22, 601-607. Neucere, N. J. (1969) Anal. Biochem, 27, 15-24. Dawson, R. (1971) Anal. Biochem, 41, 305-313. Neucere, N. J. (1974) Agri. Food Chem, 22, 146-148. 62, 108-120. Shetty, K.J. and Narasinga Rao, M.S. (1974) Anal. Biochem, A.D. (1973) J. Sci. Fd. Agri, 24, 597-609. Dawson, R. and McIntosh, Cherry, J. P. and Ory, R. L. (1973) Phytochem, 12, 283-289. Cherry, J. P. and Ory, R. L. (1973) Phytochem, 12, 1581-1583. St. Angelo, A.J. and Ory, R.L. (1975) J. Agr. Food Chem, 23, 141-146. Ory, R. L. and Cherry, J. P. (1972) PAPREA, 4, 21-31. Cherry, J. P., Ory, R. L. and Mayne, Ruth Y. (1972) PAPREA, 4, 32-40. Cherry, J. P., Neucere, N. J. and Ory, R. L. (1971) PAPREA, 3, 63-74. Neucere, N. J., Ory, R. L. and Carney, W. B. (1969) J. Agr. Food Chem, 17, 25-28. N. J. (1972) .J. Agr. Food Chem, 20, 252-255. Neucere, Savoy, C. F.,Biochim. Biophys. Acta, submitted for publication. Ornstein, L. (1964) Ann. N. Y. Acad. Sci, 121, 321-349. Davis, B. J. (1964) Ann. N. Y. Acad. Sci, 121, 404-427. Sapiro, A. L., Vin&la, E. and Maizel, J. V. (1967) Biochem. Biophys. Res. Commun, 28, 815-820. Weber, K. and Osborn, Mary (1969) J. Biol. Chem, 244, 4406-4412. Grula, E.A. and Savoy, C.F. (1971) Biochem. Biophys. Res. Commun, 43, 325-332. Young, C.T. and Hammons, R. 0. (1973) Ol&agineux, 28, 293-297. Reynolds, J.A. and Tanford, C. (1970) J. Biol. Chem, 245, 5161-5169. Scurzi, W. and Fishbein, W.N. (1973) Trans. N.Y. Acad. Sci, 35, 396-416. Hammons, R.O., Supervisory Research Geneticist and Technical Advisor, USDA, Agriculture Research Service, Tifton, GA, 31794.

893

Peanut (Arachis hypogaea L.) seed protein characterization and genotype sample classification using polyacrylamide gel electrophoresis.

Vol. 68, No. 3, 1976 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS PEANUT (ARACHIS HYPOGAEA L.) SEED PROTEIN CHARACTERIZATION AND GENOTYPE SA...
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