Molecular Ecology Resources (2015) 15, 458–459
doi: 10.1111/1755-0998.12368
GENOMIC RESOURCES NOTE
Genomic Resources Notes Accepted 1 October 2014–30 November 2014 GENOMIC RESOURCES DEVELOPMENT CONSORTIUM, 1 MARIELLA BARATTI, 2 FEDERICA CATTONARO, 3 TIZIANA DI LORENZO, 2 DIANA MARIA PAOLA GALASSI, 4 VALENTINA IANNILLI, 5 ALESSIO IANNUCCI, 2 JUST JENSEN, 6 PETER FOGED LARSEN, 7 RASMUS O. NIELSEN, 8 CINO PERTOLDI, 9 , 1 0 DRAGOS POSTOLACHE, 1 1 JOSE MARTIN PUJOLAR, 1 2 ETTORE RANDI, 1 0 , 1 3 ARITZ RUIZ-GONZALEZ, 1 3 , 1 4 , 1 5 JANNE PIA THIRSTRUP, 6 GIOVANNI GIUSEPPE VENDRAMIN 1 1 and A N D R Z E J Z A L E W S K I 1 6 1 Molecular Ecology Resources Editorial Office, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada, 2National Research Council, Institute of Ecosystem Study (ISE), Via Madonna del Piano 10, 50019 Sesto Fiorentino, Firenze, Italy, 3IGA Technology Services Srl, Via Linussio, 51 – 33100, Udine, Italy, 4Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy, 5ENEA Italian National Agency for New Technologies, Energy, and Sustainable Development, C.R Casaccia, Via Anguillarese, 301, 00123 Roma, Italy, 6Department of Molecular Biology and Genetics, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, DK-8830 Tjele, Denmark, 7Kopenhagen Research, Agro Food Park15, DK-8200 Aarhus N, Denmark, 8GenoSkan A/S, Niels Pedersens Allé 2, DK-8830 Tjele, Denmark, 9 Aalborg Zoo, Aalborg, Denmark, 10Department 18/Section of Environmental Engineering, Aalborg University, Aalborg, Denmark, 11 National Research Council, Institute of Biosciences and Bioresources (IBBR), Via Madonna del Piano 10, 50019 Sesto Fiorentino, Firenze, Italy, 12Department of Bioscience, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark, 13Systematics, Biogeography and Population Dynamics Research Group, Lascaray Research Center, University of the Basque Country (UPV/ EHU), Avda. Miguel de Unamuno, 3, 01006 Vitoria-Gasteiz, Spain, 14Department of Zoology and Animal Cell Biology, University of the Basque Country UPV/EHU, C/ Paseo de la Universidad 7, 01006 Vitoria-Gasteiz, Spain, 15Laboratorio di Genetica, National Institute for Environmental Protection and Research (ISPRA), Via Cà Fornacetta 9, 40064 Ozzano dell’Emilia, BO, Italy, 16 Mammal Research Institute, Polish Academy of Sciences, 17-230 Białowież a, Poland
Abstract This article documents the public availability of (i) RAD sequencing data and validated SNPs for the American mink Neovison vison and (ii) Transcriptome resources for two nonmodel freshwater crustacean species, the copepod Eucyclops serrulatus and the amphipod Echinogammarus veneris. Table 1 contains information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed
in the final column. Full descriptions of how each resource was developed and tested are uploaded as Supporting Information with the online version of this manuscript.
Table 1 Information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed in the final column Species (no. of individuals)
Data type
Resources
Authors
Neovison vison (14)
RAD sequencing data and validated SNPs
Sequence files: NCBI Sequence Read Archive: SRP047029 Batch files: Output files from sstacks and genotypes of test populations: Dryad doi:10.5061/dryad.85sh7 Scripts from FASTX-toolkit and for the ref map.pl. pipeline of Stacks (ustacks and sstacks): Dryad doi:10.5061/ dryad.85sh7
J. Thirstrup, A. RuizGonzalez, J.M. Pujolar, P.F. Larsen, J. Jensen, R.O. Nielsen, E. Randi, A. Zalewski, C. Pertoldi
Correspondence: Genomic Resources Development Consortium, E-mail: [email protected]
© 2015 John Wiley & Sons Ltd
G E N O M I C R E S O U R C E S N O T E 459 Table 1 (Continued) Species (no. of individuals)
Data type
Resources
Authors
Eucyclops serrulatus (20), Echinogammarus veneris (1)
Transcriptome sequencing, assembly and annotation
Raw sequence data and assembled contigs: NCBI Sequence Read Archive: Eucyclops serrulatus: BioProject:PRJNA231234 TSA: GARW01000001–GARW01051528; Echinogammarus veneris: BioProject: PRJNA231037 TSA: GARO01000001–GARO01031520 BLAST results, GO annotations, GO annotation terms, associated microsatellites for each contig and for both taxa: Dryad doi:10.5061/dryad.0h584
Mariella Baratti, Federica Cattonaro, Tiziana Di Lorenzo, Valentina Iannilli, Alessio Iannucci, Diana Maria Paola Galassi, Dragos Postolache, Giovanni Giuseppe Vendramin
© 2015 John Wiley & Sons Ltd
doi: 10.1111/1755-0998.12368
GENOMIC RESOURCES NOTE
Genomic Resources Notes Accepted 1 October 2014–30 November 2014 GENOMIC RESOURCES DEVELOPMENT CONSORTIUM, 1 MARIELLA BARATTI, 2 FEDERICA CATTONARO, 3 TIZIANA DI LORENZO, 2 DIANA MARIA PAOLA GALASSI, 4 VALENTINA IANNILLI, 5 ALESSIO IANNUCCI, 2 JUST JENSEN, 6 PETER FOGED LARSEN, 7 RASMUS O. NIELSEN, 8 CINO PERTOLDI, 9 , 1 0 DRAGOS POSTOLACHE, 1 1 JOSE MARTIN PUJOLAR, 1 2 ETTORE RANDI, 1 0 , 1 3 ARITZ RUIZ-GONZALEZ, 1 3 , 1 4 , 1 5 JANNE PIA THIRSTRUP, 6 GIOVANNI GIUSEPPE VENDRAMIN 1 1 and A N D R Z E J Z A L E W S K I 1 6 1 Molecular Ecology Resources Editorial Office, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada, 2National Research Council, Institute of Ecosystem Study (ISE), Via Madonna del Piano 10, 50019 Sesto Fiorentino, Firenze, Italy, 3IGA Technology Services Srl, Via Linussio, 51 – 33100, Udine, Italy, 4Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy, 5ENEA Italian National Agency for New Technologies, Energy, and Sustainable Development, C.R Casaccia, Via Anguillarese, 301, 00123 Roma, Italy, 6Department of Molecular Biology and Genetics, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, DK-8830 Tjele, Denmark, 7Kopenhagen Research, Agro Food Park15, DK-8200 Aarhus N, Denmark, 8GenoSkan A/S, Niels Pedersens Allé 2, DK-8830 Tjele, Denmark, 9 Aalborg Zoo, Aalborg, Denmark, 10Department 18/Section of Environmental Engineering, Aalborg University, Aalborg, Denmark, 11 National Research Council, Institute of Biosciences and Bioresources (IBBR), Via Madonna del Piano 10, 50019 Sesto Fiorentino, Firenze, Italy, 12Department of Bioscience, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark, 13Systematics, Biogeography and Population Dynamics Research Group, Lascaray Research Center, University of the Basque Country (UPV/ EHU), Avda. Miguel de Unamuno, 3, 01006 Vitoria-Gasteiz, Spain, 14Department of Zoology and Animal Cell Biology, University of the Basque Country UPV/EHU, C/ Paseo de la Universidad 7, 01006 Vitoria-Gasteiz, Spain, 15Laboratorio di Genetica, National Institute for Environmental Protection and Research (ISPRA), Via Cà Fornacetta 9, 40064 Ozzano dell’Emilia, BO, Italy, 16 Mammal Research Institute, Polish Academy of Sciences, 17-230 Białowież a, Poland
Abstract This article documents the public availability of (i) RAD sequencing data and validated SNPs for the American mink Neovison vison and (ii) Transcriptome resources for two nonmodel freshwater crustacean species, the copepod Eucyclops serrulatus and the amphipod Echinogammarus veneris. Table 1 contains information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed
in the final column. Full descriptions of how each resource was developed and tested are uploaded as Supporting Information with the online version of this manuscript.
Table 1 Information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed in the final column Species (no. of individuals)
Data type
Resources
Authors
Neovison vison (14)
RAD sequencing data and validated SNPs
Sequence files: NCBI Sequence Read Archive: SRP047029 Batch files: Output files from sstacks and genotypes of test populations: Dryad doi:10.5061/dryad.85sh7 Scripts from FASTX-toolkit and for the ref map.pl. pipeline of Stacks (ustacks and sstacks): Dryad doi:10.5061/ dryad.85sh7
J. Thirstrup, A. RuizGonzalez, J.M. Pujolar, P.F. Larsen, J. Jensen, R.O. Nielsen, E. Randi, A. Zalewski, C. Pertoldi
Correspondence: Genomic Resources Development Consortium, E-mail: [email protected]
© 2015 John Wiley & Sons Ltd
G E N O M I C R E S O U R C E S N O T E 459 Table 1 (Continued) Species (no. of individuals)
Data type
Resources
Authors
Eucyclops serrulatus (20), Echinogammarus veneris (1)
Transcriptome sequencing, assembly and annotation
Raw sequence data and assembled contigs: NCBI Sequence Read Archive: Eucyclops serrulatus: BioProject:PRJNA231234 TSA: GARW01000001–GARW01051528; Echinogammarus veneris: BioProject: PRJNA231037 TSA: GARO01000001–GARO01031520 BLAST results, GO annotations, GO annotation terms, associated microsatellites for each contig and for both taxa: Dryad doi:10.5061/dryad.0h584
Mariella Baratti, Federica Cattonaro, Tiziana Di Lorenzo, Valentina Iannilli, Alessio Iannucci, Diana Maria Paola Galassi, Dragos Postolache, Giovanni Giuseppe Vendramin
© 2015 John Wiley & Sons Ltd
