JVI Accepted Manuscript Posted Online 27 January 2016 J. Virol. doi:10.1128/JVI.02704-15 Copyright © 2016, American Society for Microbiology. All Rights Reserved.
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ESCRT-0 Component Hrs Promotes Macropinocytosis of Kaposi’s Sarcoma-
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Associated Herpesvirus in Human Dermal Microvascular Endothelial Cells
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Mohanan Valiya Veettil#, Binod Kumar, Mairaj Ahmed Ansari, Dipanjan Dutta, Jawed
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Iqbal, Olsi Gjyshi, Virginie Bottero and Bala Chandran
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H. M. Bligh Cancer Research Laboratories, Department of Microbiology and
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Immunology, Chicago Medical School, Rosalind Franklin University of Medicine and
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Science, North Chicago, Illinois 60064, USA.
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Running title: Role of Hrs in macropinocytosis of KSHV
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# Corresponding author.
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Mailing Address:
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Department of Microbiology and Immunology, Chicago Medical School,
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Rosalind Franklin University of Medicine and Science,
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3333 Green Bay Road, North Chicago, IL 60064.
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Phone (847) 578-8700x7716; Fax (847) 578-3349.
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E-mail:
[email protected] 20 21 22 1
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ABSTRACT
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Kaposi’s sarcoma-associated herpesvirus (KSHV) enters human dermal microvascular
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endothelial cells (HMVEC-d), its natural in vivo target cells, by lipid raft dependent
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macropinocytosis. The internalized viral envelope fuses with the macropinocytic membrane and
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released capsid is transported to the nuclear vicinity resulting in the nuclear entry of viral DNA.
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The Endosomal Sorting Complexes Required for Transport (ESCRT) proteins which include
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ESCRT-0, -I, -II, and -III play a central role in endosomal trafficking and sorting of internalized
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and ubiquitinated receptors. Here, we examined the role of ESCRT-0 component Hrs
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(Hepatocyte growth factor regulated tyrosine kinase substrate) in KSHV entry into HMVEC-d
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cells by macropinocytosis. Knockdown of Hrs by shRNA transduction results in significant
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decrease in KSHV entry and viral gene expression. Immunofluorescence analysis (IFA) and
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plasma membrane isolation and proximity ligation assay (PLA) demonstrate the translocation of
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Hrs from the cytosol to the plasma membranes of infected cells and association with α-actinin-4.
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In addition, infection induces the plasma membrane translocation and activation of the
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serine/threonine kinase ROCK1, a downstream target of the RhoA GTPase. Hrs knockdown
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reduces these associations suggesting that the recruitment of ROCK1 is an Hrs mediated event.
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Interaction between Hrs and ROCK1 is essential for the ROCK1 induced phosphorylation of
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NHE1 (Na+/H+ exchanger 1) involved in the regulation of intracellular pH. Thus, our studies
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demonstrate the plasma membrane association of ESCRT protein Hrs during macropinocytosis
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and suggest that KSHV entry requires both Hrs and ROCK1 dependent mechanisms, and
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ROCK1 mediated phosphorylation of NHE1 and pH change is an essential event required for the
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macropinocytosis of KSHV.
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IMPORTANCE
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Macropinocytosis is the major entry pathway of KSHV in human dermal microvascular
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endothelial cells, the natural target cells of KSHV. Although the role of ESCRT protein Hrs has
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been extensively studied with respect to endosomal movement and sorting of ubiquitinated
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proteins into lysosomes, its function in macropinocytosis is not known. In the present study, we
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demonstrate for the first time that upon KSHV infection the endogenous Hrs localizes to the
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plasma membrane and the membrane associated Hrs facilitates assembly of signaling molecules,
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macropinocytosis and virus entry. Hrs recruits ROCK1 to the membrane which is required for
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the activation of NHE1 and an increase in submembraneous intracellular pH occurring during
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macropinocytosis. These studies demonstrate that the localization of Hrs from the cytosol to the
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plasma membrane is important for coupling membrane dynamics to the cytosolic signaling
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events during macropinocytosis of KSHV.
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INTRODUCTION
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KSHV entry into its in vitro adherent target cells is a multistage process which involves
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binding of viral glycoproteins to cell surface heparan sulfate receptors, followed by interaction
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with specific entry receptors, induction of cell signaling pathways and endocytosis. KSHV
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exploits multiple host cell surface receptors including integrins-α3β1, αVβ3, αVβ5, α9β1, and
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non-integrins CD98/xCT, and EphA2 to enter the adherent target cells such as HMVEC-d
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(Human dermal microvascular endothelial) and HFF (Human foreskin fibroblasts) cells (1-6).
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The interaction of KSHV with its specific entry receptors leads to the formation of a
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multimolecular receptor complex consisting of integrins, xCT and EphA2 (2, 4, 7). Receptor
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engagement and multimolecular receptor complex formation results in auto phosphorylation of
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FAK, and the activation of Src, PI3-K and Rho GTPases, and all these molecules are targeted to
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specific entry sites on the plasma membrane (8-10). Our previous studies have demonstrated that
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the signal transduction pathways induced by KSHV and the consequent activation of their
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downstream molecules plays a central role in coordinating the actin dynamics and the membrane
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protein assembly required for the successful entry of the virus into the cytoplasm (8-10). The
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endocytosed viral particles are then transported towards the nuclear periphery along the
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microtubules by utilizing dynein motor proteins to deliver its DNA content into the nucleus (11).
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KSHV utilizes different endocytic pathways to enter different cell types (12-17). In HFF
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cells, primary B cells, and 293 cells, clathrin dependent endocytosis is the predominant pathway
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of entry (12-14), whereas in HMVEC-d cells entry occurs by bleb associated macropinocytosis
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(15, 16, 18). Bleb associated macropinocytosis begins with a remarkable set of events including
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the formation of blebs, actomyosin contraction, bleb retraction, macropinosome formation and
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eventually virus entry (18). Our studies have established that the adaptor protein c-Cbl and its
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interaction with myosin IIA light chain (MLC) plays a significant role in blebbing and that
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myosin IIA is required for both actomyosin contraction and retraction of the bleb (18). Our
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subsequent studies proved that c-Cbl is also required for both translocation of the receptors into
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the lipid raft and ubiquitination of the α3β1 and αVβ3 receptors which are critical determinants
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of the macropinocytic entry, trafficking, and productive infection of KSHV (19).
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Ubiquitination of receptors and the adaptor proteins such as c-Cbl serves to facilitate the
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endocytosis of receptors and their sorting from membrane to lysosomes and subsequent
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degradation (20, 21). In mammalian cells, the Endosomal Sorting Complexes Required for
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Transport (ESCRT) helps in sorting ubiquitinated proteins and their delivery into lysosomes. The
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ESCRT machinery consists a family of four complexes, ESCRT-0, -I, -II, and –III, which
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sequentially assemble on the endosomal membrane. The ESCRT-0 component Hrs (Hepatocyte
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growth factor (HGF)-regulated tyrosine kinase substrate) acts upstream to ESCRT complexes
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and can recruit ESCRT-I to the endosomal membranes. This complex subsequently recruits
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ESCRT-II and ESCRT-III complexes, two important complexes required for the sorting of
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ubiquitinated proteins into late endosomes (22-25).
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Hrs protein contains several domains: an N-terminal VHS-domain (Vps27p, Hrs, STAM),
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FYVE domain, an ubiquitin interacting motif, a proline-rich domain, two coiled-coil domains,
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and a C-terminal clathrin binding domain (26). The functional role of the different domains of
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Hrs includes protein-protein interaction, cellular localization, cargo sorting, and endosome
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motility (24, 25, 27, 28). Although the function of Hrs in intracellular trafficking and signal
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transduction is well established, its role in macropinocytosis remains unclear. In the present
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study, we provide evidence that Hrs is recruited to the plasma membrane early during KSHV
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infection which is required for the virus entry by macropinocytosis. Interestingly, we found that
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Hrs interacts with the Rho-associated protein kinase ROCK1, which in turn activates MLC and
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the intracellular pH-regulating protein NHE1 to promote actomyosin contraction and
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intracellular pH changes required for macropinocytosis.
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MATERIALS AND METHODS
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Cells and virus: Primary human dermal microvascular enodthelial cells (HMVEC-d CC-2543;
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Clonetics, Walkersville, MD) were grown in EBM2 medium with growth factors (Cambrex,
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Walkersville, MD). BCBL-1 cell culture, supernatant collection after TPA induction, and virus
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purification procedures were performed as described previously (1). The isolation of KSHV
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DNA from the virus, and the determination of viral copy numbers by real-time DNA PCR using
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KSHV ORF73 gene-specific primers were performed as previously described (29). All infections
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were carried out with 20 DNA copies/cell (multiplicity of infection-MOI) of KSHV, unless
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stated otherwise.
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Antibodies and reagents: Antibodies and reagents used for this study include: Anti-ROCK1
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rabbit monoclonal antibody, anti-phospho MLC rabbit polyclonal antibody, anti-Na, K-ATPase
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rabbit polyclonal antibody (Cell Signaling Technology); anti-Hrs rabbit polyclonal antibody
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(Sigma); anti-NHE1 mouse monoclonal antibody (Santa Cruz); anti-calnexin rabbit monoclonal
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antibody, mouse anti-phospho serine antibody (Abcam); anti-α-actinin-4 rabbit monoclonal
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antibody (Millipore); rabbit anti-gB and mouse anti-gpK8.1A antibodies were created in Dr.
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Chandran’s laboratory (30, 31); anti-rabbit and anti-mouse antibodies linked to horseradish
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peroxidase (KPL Inc., Gaithersburg, Md.); Texas Red conjugated dextran, Alexa 594 conjugated
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phalloidin and anti-rabbit and anti-mouse secondary antibodies conjugated to Alexa 488 or Alexa
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594 (Invitrogen); protein A and G–Sepharose CL-4B beads (Amersham Pharmacia Biotech,
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Piscataway, NJ).
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Hrs shRNA knockdown: For shRNA knockdown of Hrs, five sets of bacterial glycerol stock
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Hrs shRNA plasmid vectors (TRCN00000037894, -37895, -37896, -37897, and -37898) were
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purchased from Thermoscientific. The Hrs shRNA lentiviral plasmids were purified from the
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bacterial cultures (Invitrogen) and the lentivial particles were produced by transfection with a
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four-plasmid system, as previously described (32). Briefly, HEK 293T cells were transiently
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transfected with shRNA lentiviral constructs and the plasmid packaging system (Gag-Pol, Rev
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and VSV-G), the supernatants were collected, and filtered. The lentiviral particles produced from
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each plasmid vector were tested for knockdown efficiency by Western blot analysis. We found
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that TRCN00000037897 and TRCN00000037898 had the highest knockdown efficiency among
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the five shRNAs. Therefore, we used Hrs shRNAs created with these two plasmids (Hrs-
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shRNA1 and Hrs-shRNA2) for the experiments in this manuscript. We used Hrs shRNA1 for all
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experiments except figure 1A and 1B where we used both Hrs shRNA1 and 2. For negative
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control, a nontargeting shRNA lentiviral pool was used.
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Western blotting: Cells lysates were prepared in RIPA lysis buffer (15 mM NaCl, 1 mM
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MgCl2, 1 mM MnCl2, 2 mM CaCl2, 2 mM phenylmethylsulfonyl fluoride, and protease
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inhibitor mixture (Sigma). The lysates were centrifuged at 12,000 rpm for 15 min at 4°C and the
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protein concentration was measured with BCA reagent. Equal amounts of proteins from each
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sample were separated on SDS-PAGE and transferred to nitrocellulose membranes. Membranes
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were probed with the indicated primary antibodies and detected by incubation with species-
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specific HRP-conjugated secondary antibodies. Immunoreactive protein bands were visualized
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and imaged by enhanced chemiluminescent HRP substrate kit (Pierce, Rockford, IL). The bands
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were scanned and densitometric quantification was performed using the FluorChem FC2 and
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Alpha-Imager Systems (Alpha Innotech Corporation, San Leonardo, CA).
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Immunoprecipitation: Cell lysates were immunoprecipitated for 2h with appropriate antibodies
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and the immune complexes were captured by protein A or G-Sepharose. The immune complexes
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were then eluted in sample buffer for SDS-PAGE and run on 10% gels and transferred to
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membranes. The membranes were tested by Western blot with specific primary and secondary
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antibodies.
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Immunofluorescence microscopy: Cells grown in 8-well chamber slides were fixed with 4%
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paraformaldehyde after infection and permeabilized with 0.2% Triton X-100. The cells were
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blocked with Image-iT FX signal enhancer (Invitrogen) for 20 min, and then incubated with
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primary antibodies against the specific proteins and subsequently stained with secondary
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antibodies conjugated to Alexa 488 or 594. The stained cells were mounted in mounting medium
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with DAPI (4′,6′-diamidino-2-phenylindole) (Invitrogen) and visualized with a Nikon 80i
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fluorescent microscope equipped with Metamorph digital imaging software.
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Proximity Ligation Assay: Proximity Ligation Assay (PLA) was performed using the Duolink
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in situ detection kit (Sigma) as per the manufacturer’s instructions (33, 34). Briefly, uninfected
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and infected cells fixed with 4% paraformaldehyde solution for 15 min, permeabilized with
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Triton X- 100 for 5 min and washed with PBS, and incubated for 1h with the Duolink blocking
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buffer. The cells were then incubated with pairs of primary antibodies in Duolink antibody
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diluent solution and then labeled with Duolink PLA PLUS and MINUS probes for 1h at 37°C.
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This was followed by hybridization, ligation, amplification, and detection using a red fluorescent
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probe. The red fluorescent fluorophore-tagged oligonucleotides were visualized using a Nikon
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Eclipse 80i microscope equipped with Metamorph digital imaging software.
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Determination of KSHV entry by real-time DNA PCR: Target cells were infected with 20
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MOI of KSHV at 37°C for 2h. After infection, the cells were washed with HBSS, and treated
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with 0.25% trypsin-EDTA for 5 min at 37°C to remove the bound but non-internalized virus.
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Total DNA was isolated from the uninfected and infected cells using DNeasy kit (QIAGEN,
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Valencia, CA) and real time DNA PCR was carried out using primer sets described previously
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(29). To calculate the percent inhibition of KSHV entry, internalized KSHV DNA was
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quantitated by amplification of the ORF73 gene by real-time DNA PCR. The KSHV ORF73
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gene cloned in the pGEM-T vector (Promega) was used for the external standard.
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Determination of KSHV gene expression by real-time RT-PCR: Isolation of total RNA from
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cells, reverse transcription, and qPCR analysis were carried out using primer sets described
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previously. Briefly, total RNA was isolated from the lysate using RNeasy kit (QIAGEN),
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quantified, and the ORF73 expression was detected by real-time reverse transcription PCR using
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specific
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dehydrogenase) gene expression was used to normalize the expression levels of ORF73.
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Isolation of membrane fraction: Subcellular fractionation and cell membrane preparation were
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performed as described previously (18, 35). Briefly, cells were homogenized with a Dounce-
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homogenizer in homogenization buffer (250 mM sucrose, 20 mM HEPES, 10 mM KCl, 1 mM
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EDTA, 1 mM EGTA and protease inhibitors). The homogenate was centrifuged at 3,000 rpm for
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5 min, and the post-nuclear supernatant was centrifuged at 8,000 rpm for 5 min at 4ºC. The
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supernatant was again centrifuged at 40,000 rpm for 1h at 4ºC, and the cytosolic (supernatant)
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and membrane (pellet) fractions were separated. The membrane fractions were lysed in RIPA
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buffer and used for Western blot.
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Analysis of dextran uptake: For the dextran uptake study, HMVEC-d cells were incubated with
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Texas Red labeled dextran (40 kDa, 0.5 mg/ml; Invitrogen) and KSHV for 30 min. The cells
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were then washed twice in HBSS, fixed with 4% paraformaldehyde for 15 min, and washed three
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times with PBS. Internalized dextran was observed under immunofluorescence microscope.
primers
and
TaqMan
probes
(29).
GAPDH
(glyceraldehyde-3-phosphate
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To perform quantitative analysis of dextran uptake, the dextran positive cells were counted
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under immunofluorescence microscope. At least 10 different microscopic fields of 25-30 cells
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each were counted for each experiment and the results displayed as percentage of dextran
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positive cells.
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Intracellular pH measurement: An equal number of cells in 96 well plates were loaded with
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BCECF-AM (bis-(2-carboxy-ethyl)-5-(and-6)-carboxyfluorescein, acetoxy-methyl, 10 μM) in
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HBSS for 30 min. The cells were washed with HBSS to remove the free dye, and then infected
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with KSHV for 2, 5, and 10 min at 37°C. Immediately after infection, BCECF fluorescence
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excited with a 485/20 filter and the emission was measured with a 528/20 filter on a BioTek
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Synergy2 HT microplate reader. The average readings for each time point were calculated and
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the changes in pH expressed as relative fluorescent units.
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Statistical analyses.
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Statistical significance was calculated using a two tailed Student’s t-test. P < 0.05 was
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considered significant.
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RESULTS
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Hrs knockdown inhibits KSHV entry and gene expression in HMVEC-d cells.
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To explore the role of Hrs in KSHV infection, we performed Hrs knockdown in
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HMVEC-d cells using two different lentiviral Hrs shRNAs (Hrs shRNA1 and 2). HMVEC-d
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cells were transduced with control and Hrs shRNAs and the efficiency of knockdown was
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determined 48h after transduction by Western blotting with anti-Hrs antibody. As shown in
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figure 1A, both the Hrs shRNA1 and Hrs shRNA2 completely knockdown endogenous Hrs
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expression. To address whether Hrs inhibition affects the entry of KSHV, control and Hrs
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shRNA transduced HMVEC-d cells were infected with KSHV for 2h, DNA was isolated and the
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internalized viral DNA copy numbers were determined by measuring viral ORF73 DNA copy
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numbers by real-time DNA PCR. Compared to the control shRNA transduced cells (copy
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number 18009 ± 938), the entry of KSHV was significantly reduced (~65-70 %) in both Hrs
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shRNA1 (4427 ± 49) and Hrs shRNA2 (5330± 214) knockdown cells. Heparin-treated virus,
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which cannot bind and enter the cells, was used as a control (Fig. 1B). We next investigated
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whether Hrs knockdown also results in decreased viral gene expression. Control and Hrs shRNA
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transduced HMVEC-d cells were infected with KSHV for 24h, and viral gene expression of the
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latency associated ORF73 gene was determined by real-time RT-PCR analysis. Similar to the
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entry results, the expression of ORF73 gene in both Hrs shRNA1 (copy number 7742 ± 2180)
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and shRNA2 (8364 ± 963) was reduced compared to control cells (41135 ± 680). Hrs shRNA
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cells showed 70–80% inhibition of ORF73 gene expression (Fig. 1C), suggesting that the
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decreased viral entry results in decreased gene expression in Hrs knockdown cells.
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Since macropinocytosis is the major pathway of KSHV entry leading to a productive
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infection in HMVEC-d cells (16, 18), we asked whether the decreased entry in Hrs shRNA cells
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is correlated with macropinocytosis. The macropinocytosis of KSHV in the control and Hrs
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shRNA cells was assessed by incubating the cells with the macropinocytosis marker dextran
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(Texas Red labeled) in the presence or absence of virus for 30 min. Compared to the uninfected
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cells, KSHV infection resulted in a considerable increase in dextran uptake in the control shRNA
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transduced cells (Fig. 1D, upper and middle panel). However, Hrs shRNA cells incubated with
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dextran and KSHV showed a substantial decrease in dextran uptake compared to the control
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shRNA cells (Fig. 1D, middle and lower panel). Quantitative analysis performed by counting the
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number of dextran positive cells in the control and Hrs shRNA cells confirmed the decreased
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dextran uptake in Hrs shRNA cells (Fig. 1E). This result suggested that Hrs plays a role in
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macropinocytosis mediated entry of KSHV into endothelial cells.
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In addition to macropinocytic mode of entry in endothelial cells, KSHV is known to enter
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by clathrin mediated endocytosis in other target cells such as HFF, HEK293 and B-cells. To
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assess whether Hrs is involved in clathrin mediated endocytosis of KSHV, we examined the
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effect of Hrs knockdown on the entry of KSHV in HFF cells (Fig.1.F). HFF cells transduced
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with control or lentiviral Hrs shRNA were infected with KSHV for 2h, and the entry of KSHV
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was determined by measuring viral ORF73 DNA copy numbers by real-time DNA PCR.
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Interestingly, real-time PCR analysis demonstrated that Hrs knockdown had no significant effect
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on the entry of virus in HFF cells (Fig.1.F). These results suggest that Hrs plays a specific role in
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regulating macropinocytosis-mediated entry of KSHV, but not in clathrin mediated entry.
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Hrs localizes to the plasma membrane of KSHV infected cells.
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To ascertain the mechanism of Hrs function in the entry process of KSHV, we next
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analyzed the cellular localization of endogenous Hrs protein in the infected cells by
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immunofluorescent labeling. HMVEC-d cells were infected with KSHV for 5, 10 and 30 min
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and then stained for the KSHV envelope glycoprotein gB and host Hrs protein. As shown in
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figure 2A, Hrs was distributed throughout the cytoplasm in the uninfected cells. In contrast, at 5
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and 10 min post-KSHV infection, Hrs localized predominantly in the plasma membranes (Fig.
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2A, arrow heads), and the KSHV gB staining (Fig. 2A, block arrows) was also observed in
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similar regions of the infected cell membrane. After 10 and 30 min of infection, in addition to
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membrane staining, we observed cytoplasmic staining as well as colocalization of Hrs with
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KSHV-gB in the infected cells (Fig. 2A, yellow spots).
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To confirm the membrane localization of Hrs in the infected cells, plasma membranes
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were isolated from uninfected and infected cells and tested for the presence of Hrs using a
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specific anti-Hrs antibody. As shown in figure 2B, first panel, lanes 1-5, detection of Hrs in the
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plasma membrane fractions confirmed the membrane localization with a pattern similar to that of
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the IFA results in figure 2A. However, in the cells infected with heparin treated virus in which
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KSHV cannot bind and enter the cells (36), we did not observe the induction of membrane
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translocation (Fig. 2B, lane 6). This indicates that KSHV binding and interaction with receptors
313
are essential for the translocation of Hrs to the membrane. The purity of the membrane fraction
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was assessed by the detection of membrane positive marker Na, K-ATPase in the purified
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membrane fractions (Fig. 2B, second panel). Additionally, the absence of ER membrane marker
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calnexin by Western blot indicated that the fraction was not contaminated with the internal
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membrane proteins (Fig. 2B, third panel). Western blot of whole cell lysate using Hrs antibody
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showed no variation in the total Hrs protein level (Fig. 2B, fourth panel). The recruitment of Hrs
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to the plasma membrane of the infected cells indicated that Hrs may be involved in the initial
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stages of macropinosome formation and cytoplasmic entry of the virus.
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321
To further evaluate whether Hrs affects the cytoplasmic entry of KSHV, we examined the
322
localization of viral particles in control and Hrs shRNA cells. Cells infected with KSHV for 30
323
min were stained with rhodamine-phalloidin for filamentous actin and KSHV-gB to visualize the
324
localization of KSHV. In control cells infected with KSHV, virus particles were detected at the
325
nuclear periphery by 30 min post-infection, whereas in Hrs shRNA cells the virus particles failed
326
to enter the cells and were found stuck at the cell surface (Fig. 2C). This result indicated that
327
there is a significant correlation between the membrane recruitment of Hrs and the early stages
328
of KSHV entry by macropinocytosis.
329
Hrs localizes to the membrane by interacting with α-actinin-4 in the infected cells.
330
Macropinocytosis is an actin driven process that depends on actin polymerization and
331
membrane ruffling (37). As membrane associated Hrs affects the macropinocytosis of KSHV, we
332
rationalized that membrane localization may be achieved through the interaction of Hrs with an
333
actin binding protein that is localized to the plasma membrane. It has been shown that Hrs is a
334
binding partner of α-actinin-4 (38), a cytoskeleton scaffolding protein that transiently associates
335
with macropinosomes (39). Moreover, we have reported before that α-actinin-4 formed a
336
complex with the membrane associated proteins EphA2, myosin IIA, and CIB1 in KSHV
337
infected cells (15). Since α-actinin-4 primarily cross-links F-actin and forms α-actinin-4-F-actin
338
network surrounding macropinosomes, we hypothesized that the interaction of α-actinin-4 with
339
Hrs may localize Hrs to the membrane and influence macropinosome formation. To test this
340
hypothesis, we first determined whether KSHV infection results in the recruitment of α-actinin-4
341
to the membrane of infected cells. Immunofluorescence analysis of uninfected and KSHV
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infected cells with α-actinin-4 and KSHV envelope glycoprotein gpK8.1A antibody
343
demonstrated that the virus particles colocalize with α-actinin-4 at 10 min post infection at the
15
344
membrane of infected cells (Fig. 3A). To evaluate whether α-actinin-4 and Hrs could associate
345
with each other at the membrane, we examined the colocalization of Hrs and α-actinin-4 in
346
KSHV infected cells. Immunofluorescent analysis of uninfected and cells infected with KSHV
347
for 10 min demonstrated that Hrs colocalizes with α-actinin-4 at the membrane of infected cells
348
(Fig. 3B).
349
To visualize that the interaction of α-actinin-4 with Hrs leads to the recruitment of Hrs to
350
the cell membrane of infected cells, we used a proximity ligation assay (PLA) with antibodies
351
against Hrs and α-actinin-4. PLA enables the identification of the association between two
352
proteins which are located in close proximity (