AEM Accepted Manuscript Posted Online 29 May 2015 Appl. Environ. Microbiol. doi:10.1128/AEM.01042-15 Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Title: Dual color bioluminescence imaging for simultaneous monitoring of intestinal

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persistence of Lactobacillus plantarum and Lactococcus lactis in living mice

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Catherine Daniela, b, c #, Sabine Poireta, b, c, Véronique Dennina, b, c, Denise Boutilliera, b, c, Delphine

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Armelle Lacorreb, c, d, e, Benoit Folignéa, b, c and Bruno Pota, b, c

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Lactic acid Bacteria and Mucosal Immunity team, Institut Pasteur de Lille, Center for Infection

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and Immunity of Lille, F-59019 Lille, Francea; Université de Lille, F-59000 Lille, Franceb;

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CNRS, UMR 8204, F-59021 Lille, Francec; BioImaging Center Lille-Nord de France, F-59800

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Lille, Franced; Cellular Microbiology and Physics of Infection, Institut Pasteur de Lille, Center

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for Infection and Immunity of Lille, F-59019 Lille, France e

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# Corresponding author: Daniel, C. ([email protected])

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Running title: Dual color bioluminescent lactic acid bacteria

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Journal section: Methods

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ABSTRACT:

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Lactic acid bacteria are found in the gastrointestinal tract of mammals and have received

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tremendous attention due to their health-promoting properties. We report the development of two

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dual color luciferase-producing Lactobacillus plantarum and Lactococcus lactis for noninvasive

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simultaneous tracking in the mouse gastrointestinal tract. We previously described the functional

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expression of the red luciferase mutant (CBRluc) from Pyrophorus plagiophtalamus in L.

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plantarum NCIMB8826 and L. lactis MG1363. In this study, we determined that CBRluc is a

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better performing luciferase for in vivo localization of both lactic acid bacteria after oral

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administration, as compared with the green click beetle luciferase mutant construct developed in

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this study. We furthermore established the possibility to simultaneously detect red and green

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emitting lactic acid bacteria by dual wavelength bioluminescence imaging in combination with

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spectral unmixing. The difference in spectra of light emission by the red and green click beetle

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luciferase mutants and dual bioluminescence detection allowed in vitro and in vivo quantification

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of the red and green emitted signals and thus monitoring the dynamics and fate of the two

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bacterial populations simultaneously. Persistence and viability of both strains simultaneously

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administered to mice in different ratios was studied in vivo in anesthetized mice and ex vivo in

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mouse feces. The application of dual-luciferase-labeled bacteria has considerable potential to

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simultaneous study the interactions and potential competitions of different targeted bacteria and

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their host.

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INTRODUCTION

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Lactococci and lactobacilli are lactic acid bacteria (LAB) that have been used for thousands of

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years for the production and preservation of fermented food such as milk, vegetables and meat.

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Some specific strains are commercialized as probiotics and claimed to have health-promoting

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properties (1). The gastrointestinal tract (GIT) is the most important field of activity of LAB

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although distal effects outside the gut have been described (2). It is thus important to understand

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the interactions of the administered bacteria with their host GIT system. LAB are able to survive

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and adapt to the GIT conditions, as shown by comparative and functional genomic

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characterization of various human isolates, essentially lactobacilli (for a review, see references (2,

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3)). Some LAB, when present in the GIT of mice or humans, express a number of common

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characteristics that may relate to their intestinal niche adaptation (3, 4). However, direct in vivo

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tracking of these actions in terms of both spatial and temporal evolution would allow a better

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understanding of the survival and metabolic activities of these LAB in the gut.

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In the past decade, bioluminescence imaging (BLI) has become essential for in vivo

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noninvasive monitoring of biological processes (4). The technique relies on the detection of

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photons emitted from cells or tissues in a living organism. Bioluminescence is a biological

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process that requires an enzyme known as luciferase, an enzyme-specific substrate (e.g.

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luciferin), oxygen, magnesium and / or ATP, depending on the luciferase. Luciferases encompass

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a wide range of enzymes that catalyze light-producing chemical reactions in living organisms.

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The most used luciferase for in vivo bioluminescence imaging is represented by the Photinus

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pyralis (firefly) luciferase (Fluc) and the click beetle luciferase from Pyrophorus

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plagiophtalamus (CBluc). Both use D-luciferin as the substrate, depend on ATP, Mg and O2 and

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result in the production of green light. Red click beetle (CBRluc) and firefly luciferase variants

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with higher emission wavelengths have also been developed and greatly enhance the penetration

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and sensitivity of BLI in deep tissues (4). We previously showed that CBRluc produced in

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Lactobacillus plantarum NCIMB8826, one of most studied strains in LAB research, and

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Lactococcus lactis MG1363, a dairy starter derivative, can be successfully detected in the GIT of

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anesthetized mice by noninvasive BLI after oral administration (5).

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It has been reported that dual color BLI can be applied in vitro and in vivo using appropriate

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emission filters for the separation of bioluminescent signals and mathematical corrections for

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their deconvolution using spectral unmixing algorithms (6-8). Dual color bioluminescence has

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been described with red and green luciferases expressed by mammalian cells that can be

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separated in vivo (9). Very recently, Chang et al. showed that Fluc and CBRluc, which emit

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distinct light wavelengths, allow simultaneous imaging of two mycobacterial strains during

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infection (10).

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As LAB are studied and given to humans and animals mostly in mixtures with multiple strains

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(11), we describe the development and application of two dual color luciferase-expressing L.

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plantarum and L. lactis for noninvasive simultaneous monitoring in the GIT of small laboratory

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animals. We demonstrate that CBRluc is a better performing luciferase in vivo, as compared with

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the green click beetle luciferase (CBGluc) mutant also described in this study. We also explore

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the possibility to simultaneously detect red and green emitting LAB by dual wavelength

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bioluminescence imaging in combination with spectral unmixing.

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MATERIALS AND METHODS

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Bacterial strains, plasmids and growth conditions. Bacterial strains and plasmids are listed in

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Table 1. The L. plantarum codon-optimized cbgluc gene under the control of Pldh and the L.

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lactis codon-optimized cbgluc gene under the control of Pusp45 (the two DNA fragments were

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synthetized by Eurogentec, Belgium) were cloned into pNZ8148 as BglII-XbaI fragments,

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respectively. The two resulting constructs were subsequently introduced into L. lactis MG1363

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and L. plantarum NCIMB8826 by electrotransformation, as described elsewhere (12) and named

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L. lactis-CBGluc (Ll-CBGluc) and L. plantarum-CBGluc (Lp-CBGluc), respectively. L. lactis

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MG1363 and L. plantarum NCIMB8826 containing the empty vector pNZ8148 (named Ll-

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pNZ8148 and Lp-pNZ8148, respectively) described previously (5) served as controls in all the in

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vitro and in vivo experiments. Lp-CBRluc and Ll-CBRluc were described previously (5). Strain

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stability was tested as described previously (13).

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Escherichia coli was cultured in Luria–Bertani broth at 37°C. L. lactis was grown at 30°C in M17

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medium (Difco, Becton Dickinson, Sparks, MD) supplemented with 0.5% of glucose. L.

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plantarum was grown at 37°C in MRS medium (Difco, Becton Dickinson). Chloramphenicol

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(Sigma-Aldrich, St Quentin Fallavier, France) was added to culture media for bacterial selection

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when necessary, at a final concentration of 20µg/mL for E. coli and 10µg/mL for LAB strains.

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In vitro bioluminescence measurement. The bioluminescence of each recombinant luciferase

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was quantified as described previously (5). Briefly, recombinant bacteria were grown overnight,

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harvested by centrifugation, and washed with phosphate-buffered saline (PBS). 50 µl of each

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culture adjusted to approximately 2.5 × 1011 CFU/ml was distributed in black microplates (Nunc,

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Thermo Fisher, NY, USA) and imaged after addition of 50µl of the Bright-Glo Luciferase

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(Promega, Madison, WI, USA). Luminescence was measured at room temperature on the IVIS

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Lumina XR imaging system (Perkin Elmer, Alameda, CA, USA) using the Living Image

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software (Perkin Elmer). Each individual well was manually selected as a region of interest

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(ROI). Strains were compared on the basis of total flux of emitted light expressed as photons per

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second (p/s) measured per 1.2 × 1010 CFU of each bacterial culture. L. lactis MG1363 and L.

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plantarum NCIMB8826 containing the empty vector pNZ8148 were used to measure the

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background luminescence.

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Preparation of bacteria and administration to mice. Bacterial strains were grown

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overnight, harvested by centrifugation, and washed with PBS. Mice received 5 × 1010 CFU in

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200µl gavage buffer (0.2 M NaHCO3 buffer containing 1% glucose, pH 8). Eight-week-old

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female BALB/c mice were purchased from Charles River (St Germain sur l’Arbresle, France).

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Experiments were performed in an accredited establishment (no. A59107; Institut Pasteur de

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Lille) according to European guidelines (number 86/609/CEE), and animal protocols were

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approved by the local ethics committee.

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In vivo persistence of LAB in the GIT of mice. Groups of five mice received a unique, daily

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dose of 5 × 1010 CFU of live recombinant strains (Lp-CBRluc, Ll-CBRluc, Lp-CBGluc, or Ll-

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CBGluc) or different doses of the two different recombinant strains (one expressing CBRluc and

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the other CBGluc) administered for four consecutive days by oral gavage. Control mice received

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Lp-pNZ8148 and Ll-pNZ8148 in the different experiments. Fecal samples were individually

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collected at different time-points and mechanically homogenized in PBS. No chloramphenicol-

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resistant bacteria were detected in non-inoculated mice. Mice were anesthetized with 2%

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isoflurane and sacrificed by cervical dislocation and mouse digestive tracts were immediately

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excised before ex vivo bioluminescence imaging. As described previously, the intestines were

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injected with air to enhance the bioluminescent signal (5). Experiences were repeated twice.

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In vivo bioluminescence imaging. Bioluminescence imaging was performed using a

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multimodal IVIS Lumina XR imaging system (Perkin Elmer) as described previously (5). Mice

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were anesthetized with 2% isoflurane and D-luciferin potassium salt (Perkin Elmer) was

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administered to animals, intragastrically 15 minutes before the oral administration of the bacteria.

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Two hours later, mice were placed into the specimen chamber of the IVIS imaging system where 6

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a controlled flow of 1.5% isoflurane was administered through a nose cone via a gas anesthesia

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system (Tem Sega, Lormont, France). A grayscale reference photography under low illumination

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was taken as an overlay prior to detection of emitted photons over 1s to 5 min, depending on

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signal intensity and using the Living Image software (Perkin Elmer). A pseudocolour image

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representing detected light intensity was generated using the Living Image software and

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superimposed over the grayscale reference photography. For each individual mouse, the ROI

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corresponding to the mouse digestive tract was manually selected.

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In vitro and in vivo spectral unmixing of emission wavelengths. To separate the red

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bioluminescent signal (CBRluc with an emission peak at 620 nm) from the green signal (CBGluc

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with an emission peak at 540 nm) in mixed cultures of L. lactis and L. plantarum, either (i) in

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vitro in microplates, (ii) in vivo in mice after co-administration of both strains by oral gavage,

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(iii) ex vivo on dissected GITs, or (iv) directly in feces, images were taken using a set of 20 nm

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step emission filters (500 Series high spectral resolution emission filters, Perkin Elmer) from 500

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nm to 620 nm. The Living Image software was used for generating spectrally unmixed images

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and quantification of each signal.

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RESULTS

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In vitro comparison of the production of CBGluc and CBRluc in L. lactis and L. plantarum.

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The bioluminescent signals produced by the different recombinant L. lactis and L. plantarum was

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quantified and compared in vitro on bacterial cultures adjusted to 2.5 × 1011 CFU/ml (Fig. 1).

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Results show that maximum bioluminescence is obtained with Lp-CBRluc and Lp-CBGluc with

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mean values of 5.1 × 1010 and 4.1 × 1010 p/s (per 1.2 × 1010 CFU, equivalent to 50µl of bacterial

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culture). Approximately 36-fold lower bioluminescent signals were obtained with L. lactis strains

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producing CBGluc and CBRluc. No statistical difference was found between the production of 7

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CBGluc and CBRluc for the respective strains. In L. lactis and L. plantarum, plasmids 271 and

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269, respectively, were remarkably stable with 100% of bioluminescent colonies even after

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approximately 100 generations (10 subcultures) in non-selective medium.

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As observed earlier for CBRluc-producing strains (5), there was an excellent correlation

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between CFU counts and in vitro bioluminescent signals from CBGluc-expressing strains (data

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not shown). The bioluminescence system allowed the detection of bacterial amounts as low as 5

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× 104 CFU/ml for Lp-CBGluc [similar to Lp-CBRluc (5)] and 5 × 105 CFU/ml for Ll-CBGluc

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[similar to Ll-CBGluc (5)].

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Comparison of the persistence of CBGluc- and CBRluc-producing L. lactis and L.

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plantarum in the digestive tract of mice after 4 daily oral administrations. As we had

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previously shown that differences in bacterial persistence in mice are more pronounced after

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multiple daily oral administrations (5), groups of mice were given a daily dose of 5 × 1010 CFU

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of each recombinant strain for four consecutive days. The bioluminescent signal was quantified

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each day by direct imaging in 5 anesthetized mice (Fig. 2). The same mice were used during the

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whole experiment. The signal was very strong for the four strains on day 1 and remained at a

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similar level till the last day of oral administration (day 4). Results show that from day 1 to day 4,

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Lp-CBRluc emitted the highest bioluminescent signal (mean value of 1.2 × 108 p/s), 6-fold higher

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than Lp-CBGluc, 14-fold higher than Ll-CBRluc and 111-fold higher than Ll-CBGluc. Signals of

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both L. lactis strains decreased to background level at day 5, whereas signals of both L.

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plantarum strains decreased to background level only at day 7.

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Simultaneous monitoring of red and green bioluminescent signals by dual color in vivo

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imaging. In order to test the CBRluc/CBGluc pair of luciferases for in vivo applications, groups

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of mice were orally given a dose of Lp-CBRluc, Lp-CBGluc, or a mixture (50/50) of L. 8

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plantarum expressing CBRluc and expressing CBGluc for four days. The bioluminescent signal

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was measured each day in mice and a series of images at different wavelengths ranging from 500

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to 620 nm were acquired (Fig. 3A) Representative images of a spectral unmixing of the red and

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green signals are shown in Figure 3. The respective red and green signals are separated and

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quantified after applying the spectral unmixing algorithm to the acquired images series. The

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resulting Unmix1 image displays the green signal from Lp-CBGluc while the resulting Unmix 2

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image displays the red signal from Lp-CBRluc (Fig. 3B). The red signal was not detected in the

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green emission light image and the green signal was not detected in the red emission light image

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which confirmed the good spectral unmixing of both signals. Moreover, both signals were

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detected in mice administered with a mixture of Lp-CBRluc and Lp-CBGluc.

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Simultaneous monitoring of red and green bioluminescent signals after co-administration

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of L. plantarum-CBRluc and L. lactis-CBGluc by dual color in vivo imaging. In order to

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simultaneously study the persistence of L. plantarum and L. lactis in mice, groups of mice were

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orally given a daily dose of Lp-CBRluc, Ll-CBGluc, or different mixtures (20/80, 50/50 and

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80/20) of Lp-CBRluc/Ll-CBGluc for four days. We found that red signals in mice administered

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with a mixture of 50/50 or 80/20 of Lp-CBRluc/Ll-CBGluc, are similar to red signals of mice

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administered with 100% Lp-CBRluc (no statistical difference) from day 1 to day 6 (Fig. 4A). The

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same observation was made for green signals in mice administered only with Ll-CBGluc (Fig.

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4B). However, red signals in mice administered with L. plantarum only are statistically higher

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than red signals in mice administered with a mixture of 20% of L. plantarum/80% of L. lactis

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from day 1 to day 6. Similarly, green signals in mice administered with 100% L. lactis are

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statistically higher than green signals in mice administered with a mixture of 20% of L.

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lactis/80% of L. plantarum. The values of red signals from L. plantarum given alone (mean value

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of 1.4 × 108 p/s from day 1 to day 4) are statistically higher than green signals from L. lactis

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given alone (p

Dual-Color Bioluminescence Imaging for Simultaneous Monitoring of the Intestinal Persistence of Lactobacillus plantarum and Lactococcus lactis in Living Mice.

Lactic acid bacteria are found in the gastrointestinal tract of mammals and have received tremendous attention due to their health-promoting propertie...
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