Molecular Ecology Resources (2014) 14, 1095
doi: 10.1111/1755-0998.12298
GENOMIC RESOURCES NOTE
Genomic Resources Notes accepted 1 April 2014 – 31 May 2014 DE LA GENOMIC RESOURCES DEVELOPMENT CONSORTIUM, 1 MARINELA CONTRERAS, 2 JOS E 2,3 4 5,6 7 ~ FUENTE, AGUST IN ESTRADA-PE NA, LIBOR GRUBHOFFER and R A Q U E L T O B E S 1 Molecular Ecology Resources Editorial Office, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada, 2SaBio, Instituto de Investigacion en Recursos Cinegeticos IREC CSIC-UCLM-JCCM, Ronda de Toledo s/n, 13005 Ciudad Real, Spain, 3Department of Veterinary Pathobiology, Center for Veterinary Health Sciences, Oklahoma State University, Stillwater, OK 74078, USA, 4 Department of Parasitology, Faculty of Veterinary Medicine, University of Zaragoza, Miguel Servet 177, 50013, Zaragoza, Spain, 5 e Budejovice, Czech Republic, 6Faculty of Biology Centre of the AS CR, Institute of Parasitology, Branisovska 31, 37005 Cesk Science, University of South Bohemia, Branisovska 31, 37005 Ceske Budejovice, Czech Republic, 7Oh no sequences! Research group, Era7 Bioinformatics, Plaza Campo Verde no. 3 Atico, 18001 Granada, Spain
Abstract This article documents the public availability of a global transcriptome comparison between Lyme disease tick vectors, Ixodes scapularis and Ixodes ricinus. Table 1 contains information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for this genomic resource are listed in the final column. Full descriptions of how each resource was developed and tested are uploaded as Supplemental Information with the online version of this manuscript.
Supporting Information Additional Supporting Information may be found in the online version of this article: Appendix S1. Full descriptions of how each resource was developed and tested.
Table 1 Information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed in the final column Species (no. of individuals) Ixodes ricinus (30 adult female ticks, 300 larvae)
Data type
Resources
Authors
Transcriptome sequences
Sequence files: FASTQ files with reads from I. ricinus larvae samples and adult female salivary gland samples available from DRYAD entry doi: 10.5061/dryad.9js92; BAM files containing the Tophat-accepted hits of the I. ricinus larvae samples and adult female salivary gland samples available from DRYAD entry doi: 10.5061/dryad.9js92; BAI file corresponding to the BAM file of the I. ricinus larvae samples and adult female salivary gland samples Tophat-accepted hits available from DRYAD entry doi: 10.5061/dryad.9js92 Code: Commands to map the reads to the reference genome, I. ricinus larvae samples (IL-tophat-run) and adult female salivary gland samples (IG-tophat-run) available from DRYAD entry doi: 10.5061/dryad.9js92
Contreras, Marinela; Tobes, Raquel; Grubhoffer, Libor; Estrada-Pe~ na, Agustın; de la Fuente, Jose
Correspondence: Genomic Resources Development Consortium, E-mail: [email protected]
© 2014 John Wiley & Sons Ltd
doi: 10.1111/1755-0998.12298
GENOMIC RESOURCES NOTE
Genomic Resources Notes accepted 1 April 2014 – 31 May 2014 DE LA GENOMIC RESOURCES DEVELOPMENT CONSORTIUM, 1 MARINELA CONTRERAS, 2 JOS E 2,3 4 5,6 7 ~ FUENTE, AGUST IN ESTRADA-PE NA, LIBOR GRUBHOFFER and R A Q U E L T O B E S 1 Molecular Ecology Resources Editorial Office, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada, 2SaBio, Instituto de Investigacion en Recursos Cinegeticos IREC CSIC-UCLM-JCCM, Ronda de Toledo s/n, 13005 Ciudad Real, Spain, 3Department of Veterinary Pathobiology, Center for Veterinary Health Sciences, Oklahoma State University, Stillwater, OK 74078, USA, 4 Department of Parasitology, Faculty of Veterinary Medicine, University of Zaragoza, Miguel Servet 177, 50013, Zaragoza, Spain, 5 e Budejovice, Czech Republic, 6Faculty of Biology Centre of the AS CR, Institute of Parasitology, Branisovska 31, 37005 Cesk Science, University of South Bohemia, Branisovska 31, 37005 Ceske Budejovice, Czech Republic, 7Oh no sequences! Research group, Era7 Bioinformatics, Plaza Campo Verde no. 3 Atico, 18001 Granada, Spain
Abstract This article documents the public availability of a global transcriptome comparison between Lyme disease tick vectors, Ixodes scapularis and Ixodes ricinus. Table 1 contains information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for this genomic resource are listed in the final column. Full descriptions of how each resource was developed and tested are uploaded as Supplemental Information with the online version of this manuscript.
Supporting Information Additional Supporting Information may be found in the online version of this article: Appendix S1. Full descriptions of how each resource was developed and tested.
Table 1 Information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed in the final column Species (no. of individuals) Ixodes ricinus (30 adult female ticks, 300 larvae)
Data type
Resources
Authors
Transcriptome sequences
Sequence files: FASTQ files with reads from I. ricinus larvae samples and adult female salivary gland samples available from DRYAD entry doi: 10.5061/dryad.9js92; BAM files containing the Tophat-accepted hits of the I. ricinus larvae samples and adult female salivary gland samples available from DRYAD entry doi: 10.5061/dryad.9js92; BAI file corresponding to the BAM file of the I. ricinus larvae samples and adult female salivary gland samples Tophat-accepted hits available from DRYAD entry doi: 10.5061/dryad.9js92 Code: Commands to map the reads to the reference genome, I. ricinus larvae samples (IL-tophat-run) and adult female salivary gland samples (IG-tophat-run) available from DRYAD entry doi: 10.5061/dryad.9js92
Contreras, Marinela; Tobes, Raquel; Grubhoffer, Libor; Estrada-Pe~ na, Agustın; de la Fuente, Jose
Correspondence: Genomic Resources Development Consortium, E-mail: [email protected]
© 2014 John Wiley & Sons Ltd
