AAC Accepts, published online ahead of print on 7 April 2014 Antimicrob. Agents Chemother. doi:10.1128/AAC.01043-13 Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Bactericidal activity of human skin fatty acid

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Analysis of the Bactericidal Activity of the Human Skin Fatty Acid, Cis-6-Hexadecanoic Acid on

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Staphylococcus aureus

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Michaël L. Cartron1, Simon R. England2, Alina Iulia Chiriac3, Michaele Josten3, Robert

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Turner1, Yvonne Rauter1, 4, Alexander Hurd1, Hans-Georg Sahl3, Simon Jones2 and Simon J

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Foster1#

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The Krebs Institute, Department of Molecular Biology and Biotechnology, University of Sheffield,

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Western Bank, Sheffield S10 2TN, United Kingdom 2

Department of Chemistry, University of Sheffield, Dainton Building, Brook Hill, Sheffield. S3 7HF.

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United Kingdom 3

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Institute of Microbiology, Immunology and Parasitology, Medical Faculty, University of Bonn,

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Sigmund-Freud-Str. 25, 53105 Bonn, Germany 4

Present address: Institute for Molecular and Clinical Immunology, Helmholtz Center for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany

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Running title: Bactericidal activity of human skin fatty acid

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# Correspondent footnote: Simon J. Foster, the Krebs Institute, Department of Molecular Biology and

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Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom. Tel.:

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0044 114 2224411, E-mail: [email protected]

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Bactericidal activity of human skin fatty acid

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Abstract

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Human skin fatty acids are a potent aspect of our innate defences, giving surface protection

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against potentially invasive organisms. They provide an important parameter in determining

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the ecology of the skin microflora and alterations can lead to increased colonisation by

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pathogens such as Staphylococcus aureus. Harnessing skin fatty acids may also give a new

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avenue to explore in the generation of control measures against drug resistant organisms.

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Despite their importance the mechanism(s) whereby skin fatty acids kill bacteria have remained

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largely elusive. Here we describe an analysis of the bactericidal effects of the major human skin

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fatty acid, cis-6-hexadecenoic acid (C6H) on the human commensal and pathogen, S. aureus.

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Several, C6H concentration dependent, mechanisms were found. At high concentrations C6H

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swiftly kills cells associated with a general loss of membrane integrity. However at lower

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concentrations C6H is still able to kill, acting via disruption of the proton motif force, an

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increase in membrane fluidity and effects on electron transfer. The design of analogues, with

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altered bactericidal effects has begun to determine the structural constraints on activity and

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paves the way for rational design of new antistaphylococcal agents.

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Bactericidal activity of human skin fatty acid

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Introduction

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The human skin is an important protection against microbial infection. The epidermis provides a

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physical barrier via an external cross-linked keratin layer upon a scaffold of keratinocytes. Most

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importantly the skin also has a broad range of innate immunity components including antimicrobial

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peptides and fatty acids ((1), (2) and (3)). Despite these properties the skin is host to a large and

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complex microflora of over 1000 species (4).

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commensals but there are also opportunist pathogens.

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potentially dangerous organisms is thus of great interest as harnessing our innate defences may lead to

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novel control regimes.

Many of these microorganisms are harmless How the skin is able to defend against

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Staphylococcus aureus is an extremely versatile bacterium, whose primary niche is as a

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commensal in the human nose. Despite being carried harmlessly by 30% of the human population this

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organism is an opportunist pathogen causing many infections and deaths worldwide (5). The problem

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is exacerbated by the alarming spread of antibiotic resistance, in particular methicillin resistant S.

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aureus (MRSA) is prevalent in hospitals and is beginning to spread in the wider community.

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ability of S. aureus to survive in the nares and on the skin is an important facet of its capacity to spread

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from host to host. In particular skin fatty acids in sebum have been found to be potent staphylocidal

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agents ((6), (3) and (7)). Fatty acids are an important facet of our innate defences and in fact a toll-like

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receptor mediated pathway in mice leads to increased fatty acid production and protection against S.

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aureus skin infections (8). The most important antistaphylococcal, human, skin fatty acid is cis-6-

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hexadecanoic acid (C16:1Δ6, C6H) ((3) and (7)). Patients with atopic dermatitis show reduced C6H

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levels and increased colonisation with S. aureus and topical treatment with C6H results in a decrease

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in S. aureus levels (7). We have also shown that purified C6H can be used to treat both cutaneous and

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systemic models of S. aureus disease (9). Fatty acids are also able to kill S. aureus within abscesses

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(10). As well as being bactericidal, at sublethal concentrations human sebum and C6H can inhibit the

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production of virulence determinants and the induction of antibiotic resistance by S. aureus and other

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important pathogens (9). Thus fatty acids can debilitate potentially harmful bacteria at several levels.

The

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In response to such a potent molecule, S. aureus possesses a number of resistance mechanisms,

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which allow it to withstand skin fatty acids ((11) and (9)). We have found that the major S. aureus 3

Bactericidal activity of human skin fatty acid

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surface protein IsdA is produced in response to the lack of available iron associated with the human

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host and is required for nasal colonisation (9). IsdA contributes to skin fatty acid resistance by

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rendering the cells more hydrophilic via its C-terminal domain. It is also this domain that is required

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for survival of S. aureus on human skin. Thus the interaction between S. aureus and human skin fatty

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acids is a crucial factor in its ability to colonize a host. Despite this importance it is still unknown as

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to the bactericidal mechanism of action of skin fatty acids on S. aureus. The surfactant nature of these

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compounds likely results in membrane perturbation. Fatty acids also inhibit many central metabolic

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processes but this may occur indirectly via uncoupling of ATP synthesis ((12) and (13)). Also

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accumulation and incorporation of linoleic acid ((12)

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hydroperoxides ((15) and (16)).

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staphylocidal skin fatty acid, C6H, on S. aureus. This revealed multiple mechanisms of killing via the

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ability of C6H to disrupt essential membrane functions.

and (14)) may result in toxic lipid

This study aimed to elucidate the mode of action of the major

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Materials and Methods

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Bacterial strains and chemicals - S. aureus strain SH1000 was used in all assays except otherwise

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stated. Inverted vesicles and membranes were prepared from Micrococcus flavus and Escherichia coli

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K12. All chemicals were purchased from Sigma Aldrich except as otherwise stated. Radiolabelled

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[14C]-UDP-GlcNAc was from Hartmann Analytic (Germany) and undecaprenyl phosphate (C55-P)

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from Larodan Fine chemicals, (Sweden). Bacteria were routinely grow in BHI (Brain Heart Infusion)

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medium aerobically, for anaerobic growth cells were grown in air tight anaerobic jars.

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C6H Killing Assays - Bacteria were grown to an OD600 of c. 0.6 in iron limited, tryptic soy broth

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(TSB), or chemically defined medium (CDM) (17). Cells were harvested by centrifugation at 3000 g

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(4oC, 5 min) washed twice in sterile dH2O by centrifugation and resuspension. Cell suspensions (c.

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2×108cfu/ml in appropriate buffers) were incubated at 37°C with and without C6H (and other

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chemicals). Except when stated otherwise, all experiments were done in 20mM Mes pH 5.5 with 3

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µg/ml C6H. Cell viability was determined by plating on TSB agar (9).

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MICs - MICs were determined as previously described (9).

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Bactericidal activity of human skin fatty acid

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Assessment of membrane integrity - Membrane integrity was assayed by determination of the

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permeability of the cells to propidium iodide (P-io). Nisin served as positive control for membrane

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disruption. Bacteria were prepared as for the C6H killing assay (in 20 mM Mes) and P-io was added to

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the cell suspension to a final concentration of 13 μM and fluorescence of the mixture was followed

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with excitation at 535nm and emission at 617nm (18). After 1 min equilibration time C6H was added

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to the assay (at 3 or 5µg/ml).

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Effect of C6H on lipid II polymerization – Lipid II was purified as described by Schneider et al.

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(19). The enzymatic activity of S. aureus PBP2 was determined by incubating 2.5 nmol lipid II in 100

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mM Mes, 10 mM MgCl2 , pH 5.5, and 0, 2, 4, 20 and 40nM C6H in a total volume of 50 µl. The

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reaction was initiated by the addition of 7.5 µg PBP2-His6 and incubated for 1.5 h at 30°C. Residual

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lipid II was extracted from the reaction mixtures with n-butanol/pyridine acetate, pH 4.2 (1:1; v/v),

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and analysed by TLC (silica plates, 60F254; Merck) using chloroform–methanol–water–ammonia

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(88:48:10:1 v/v) as the solvent. (20). Spots were visualized by PMA staining reagent

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(phosphomolybdic acid 2.5%, ceric-sulfate 1%, sulphuric acid 6%). After drying the TLC plate, spots

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are developed by heating at 150°C (21).

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Inhibition of the in vitro lipid II synthesis

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Inhibition of lipid II synthesis was performed in vitro using membrane preparations of

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Micrococcus luteus DSM 1790 as described by Schneider et al., (2004) (19) with the addition of

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radiolabelled [14C]-UDP-GlcNAc. Membranes were isolated from lysozyme-treated cells by

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centrifugation (40.000 x g, 60 min, 4oC), washed twice in 50 mM Tris-HCl, 10 mM MgCl2, pH 7.5,

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and stored under liquid nitrogen until use. Reaction mixtures were carried out in a final volume of 75

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µl containing 400 µg of membrane protein, 5 nmol C55-P, 50 nmol UDP-N-acetylmuramyl

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pentapeptide (UDP-MurNAc-PP), 50 nmol [14C]-UDP-GlcNAc in 60 mM Tris-HCl pH 8, 5 mM

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MgCl2 and 0.5% (w/v) Triton X-100. UDP-MurNAc-PP was purified as described previously (22).

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C6H was added to the reaction mixture in molar ratios of 2:1 referring to the total amount of C55-P (5

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nmol). After 1 h at 30°C, the lipids were extracted with 1 volume of n-butanol/6 M pyridine-acetate

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(2:1, v/v), pH 4.2. The reaction products were separated by TLC (silica plates, 60F254; Merck) using

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chloroform-methanol-water-ammonia (88:48:10:1) as solvent (20). Radiolabelled spots were 5

Bactericidal activity of human skin fatty acid

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visualized using a biomolecular imager for radioisotope detection (Storm 820 PhosphorImager,

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Amersham Biosciences) and the image was analyzed with ImageQuant TL v2005 (Nonlinear

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Dynamics Ltd) software.

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Determination of membrane potential (ΔΨ) using TPP+ - To 5 ml of cell suspension (prepared as

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above), at 37oC, 5 μl of 3H-TPP (3H tetraphenylphosphonium; final concentration 1μCi/ml (0.74-1.48

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TBq/mmol) was added. 100 μl samples were removed, washed with PBS by filtration and used to

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calculate total emission. Where appropriate, valinomycin and/or C6H were added (20 and 3 μg/ml

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final concentration, respectively) and samples prepared as above. Calculation of the membrane

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potential was as previously described (23).

131 132

Assessment of pHin- The experiment and controls were performed as previously described by Breeuwer et al. (24) using cell prepared as above.

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ATP assays– Cell suspensions were prepared as above, samples (200μl) were taken and 800μl

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DMSO added. Cells were recovered by centrifugation (10,000 g, 5 min, RT) and the supernatant

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removed for analysis of extracellular ATP. ATP levels were measured using a bioluminescence assay

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(Sigma).

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Respiration - Cells grown as above for the killing assays were resuspended to an OD600c. 1.0 in

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iron limited TSB transferred to a Clark-type oxygen electrode chamber and oxygen consumption

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recorded.

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Membrane fluidity - Cell membrane fluidity was determined by measuring fluorescence

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polarization with 1,6-diphenyl-1,3,5-hexatriene (DPH; Sigma), as described by Bayer et al. (25). A

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1ml S. aureus cell suspension was prepared as above (OD600 of c. 1.0) and DPH (2 μM final

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concentration) was added. Fluorescence polarization was measured immediately after addition of

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inhibitor to the labelled sample (1ml) using an Edinburgh Instruments 199 spectrometer. The

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excitation and emission wavelengths were 360 and 426 nm, respectively. The degree of fluorescence

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polarization, or the polarization index (PI), was calculated from the following formula [IV − IH

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(IHV/IHH)]/[IV + IH (IHV/IHH)], where I is the corrected fluorescence intensity and subscripts V and H

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Bactericidal activity of human skin fatty acid

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indicate the values obtained with vertical or horizontal orientation of the analyzer, respectively. The

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lower that the PI value is, the more fluid is the membrane ((25), (26) and (27)).

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INT reduction assay - Reduction of the iodonitrotetrazolium chloride (INT) by the components of the

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electron transport chain (ETC) was performed as described by Smith & McFeters, (28) in 250 µl

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volume reaction.

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Preparation of inverted vesicles - Inverted vesicle were prepared using a method adapted from

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Burstein et al. (29). Cells from a 1l TSB post-exponential phase culture (OD600 3-4) were harvested

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by centrifugation (3,000 xg, 10 min, 4°C) washed with 100 ml buffer containing 50 mM Tris-HCl pH

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8.0, 2 mM MgCl2, 0.5 mM dithiothreitol, 0.5 mM EDTA. The pellet was resuspended with 5 ml of the

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same buffer, the pH was adjusted to 8.0 and 10 µg/ml DNAse and 10 µg/ml RNAse added. The cells

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were disrupted by mechanical lysis using a microorganism lysing kit (0.1 mm glass beads in 2 mL

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standard tubes) in a Precellys®24 homogenizer. The crude homogenate was centrifuged at 30,000 xg,

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(20 min, 4°C). The resulting supernatant was centrifuged at 175,000 xg (120 min, 4°C) and the pellet

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containing the vesicles was finally resuspended in 2 ml of the above buffer supplemented with 10%

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(v/v) glycerol and stored in liquid nitrogen.

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Liposomes-. Liposomes were prepared and quantified according to Bonelli et al. (30). 2µmol of

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DOPC (1,2-dioleoyl-sn-glycero-3-phosphocholine, Avanti polar lipid) was dried in a glass tube. 300µl

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of a 50mM carboxyfluorescin, 50mM NaCl or KCl solution was added to the dried DOPC. The glass

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tube was vortexed thoroughly, freeze thawed 10 times and then extruded through a 400nm pore

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membrane. Liposomes were loaded on a Sephadex G50 column pre-equilibrated with the appropriate

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buffer and harvested by centrifugation (13000 g,1 min, RT).

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Production of C6H analogues - The synthesis of C6H analogues and BODIPY dyes were carried

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out by sequential alkylation of alkynyl anions with appropriate alkyl and tetrahydropyranyl alkyl

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bromides, followed by dichromate oxidation to the carboxylic acid. Comprehensive details will be

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reported in due course. A method describing a similar strategy to produce related compounds has

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recently been described in the literature (31).

174 175

Transmission Electron Microscopy - Samples were prepared and analysed as previously described (32). 7

Bactericidal activity of human skin fatty acid

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Fluorescence Microscopy - 17 μM Bodipy 1(in DMSO) and 10 μl of a 1μg/ml solution of

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BODIPY labelled vancomycin (Vancomycin, BODIPY® FL Conjugate, InvitrogenTM) were added to

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1 mL of S. aureus (grown as above) and incubated for 5 minutes at 37 °C on a rotary wheel (20 rpm).

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The cells were harvested by centrifugation (10,000 g, 1 min, 4°C) and washed, 3 times, by

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resuspension in dH2O, fixed, mounted and examined by deconvolution microscopy as previously

181

described (33).

182

Ion level determination – Cells were grown and treated as for a killing assay described earlier. At

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each time point required cells were harvested by centrifugation (10,000 g, 1 min, 4°C) and ion levels

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within the supernatant were monitored via the ion chromatography service (Kroto Centre, University

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of Sheffield).

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Statistics – The students T-test was used where appropriate.

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Results

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Characterisation of the bactericidal effects of C6H - Previous work has demonstrated that C6H is

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able to kill S. aureus ((9) and (7)). It is well established that the pH of the skin is slightly acidic (34)

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and so the effect of pH on C6H sensitivity was tested (Fig. 1A). S. aureus shows greatest survival at

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pH 5.5 (~skin pH) without C6H losing only 50% viability after 2hr. Paradoxically 5μg/ml C6H has its

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greatest activity at pH 5.5 with only 0.5% survival after 2 hr treatment in MES buffer (Fig. 1B). There

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is also a clear C6H dose dependence in S. aureus survival at pH 5.5 (Fig. 1C). At 10μg/ml C6H

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viability is quickly lost (>99% death after 30min). At 3 and 5μg/ml C6H, 60 and 99% of cells were

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nonviable after 30 min respectively.

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In order to begin to determine the molecular mechanism of C6H bactericidal activity, propidium

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iodide (P-io) was used. P-iofluorescence greatly increases upon binding to nucleic acids and so it can

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be used as a marker for membrane integrity, when added to the extracellular milieu. At pH 5.5, only

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concentrations of C6H above 3μg/ml led to a rapid loss of membrane integrity as shown by an

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increase in fluorescence (Fig. 2A,B). However at 3μg/ml C6H the cells still die. This suggests that

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death can occur independently of drastic membrane permeabilization.

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Bactericidal activity of human skin fatty acid

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Inhibition of C6H activity by salts- Potassium ions have previously been shown to affect fatty

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acid activity on mitochondria (35). Addition of 50mM KCl to 50mM Mes pH 5.5 gave a significant

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reduction in the rate of killing by 5μg/ml C6H (p value 0.03 at 60min) but to a lesser extent by 3μg/ml

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C6H (p value 0.19 at 60min) (Fig. 1C). Addition of NaCl or CaCl2 also had a similar inhibitory effect

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(data not shown). Salt inhibition of C6H activity further suggests more than one mode of killing,

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disruption of membrane integrity and an uncharacterised mechanism at lower concentrations

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(≤3μg/ml). The binding of P-io to nucleic acid was inhibited in the presence of salt hence preventing

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the fluorescence assay.

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Does C6H affect peptidoglycan synthesis? – Previously the lantibiotic nisin has been shown at low

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concentrations to associate with lipid II (a precursor in the peptidoglycan biosynthesis pathway)

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which leads to simultaneous inhibition of cell wall biosynthesis and formation of defined pores in the

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cell membrane whilst at high concentration it has several other effects such as induction of autolysis

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and destabilization of the lipid bilayer (36). Initially, using M. luteus isolated membranes, C6H was

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found not to inhibit the synthesis of lipid II (data not shown). The effect of C6H on peptidoglycan

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synthesis via binding to lipid II was then tested. Using nisin as a positive control, C6H was found to

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have no apparent capacity to bind lipid II or to inhibit the activity of S. aureus PBP2, which has the

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ability to polymerise lipid II (data not shown).

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C6H affects the proton motive force (PMF)- Figure 1B demonstrates that S. aureus is more

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susceptible to C6H at low pH. At pH 5.5 C6H, 3μg/ml leads to cell death (Fig. 1C), but without

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apparent loss of membrane integrity (Fig. 2A). The action of C6H may involve movement of protons

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across the membrane with C6H acting as a protonophore. The PMF has two components: membrane

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potential (ΔΨ) and proton gradient (ΔpH) (PMF,Δp = ΔΨ − 59 ΔpH). The cells use both to generate

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ATP using the flow of protons through the ATPase. A protonophore affects both components of the

226

PMF.

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polarised (data not shown). Lower concentrations of C6H (3μg/ml) led to an apparent membrane

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depolarisation (Fig. 2C) and then slower repolarisation, compared to valinomycin. Hence C6H affects

229

the ΔΨ component of the PMF.

At high concentrations of C6H (≥5μg/ml), the membrane depolarises rapidly to become un-

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Bactericidal activity of human skin fatty acid

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The ΔpH was measured using the fluorophore, cFDASE. Once intracellular, the ratio in the

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emission at 530 nm from excitation at 500 and 440nm is a marker of pH. By calibrating that ratio it is

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then possible to assess the intracellular pH. High concentrations of C6H (≥5μg/ml) led to a rapid drop

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of internal pH within minutes resulting in an equilibration of the internal pH with the outside pH of 5.5

234

(data not shown). With 3μg/ml C6H, the internal pH drops rapidly by around 0.1 pH unit in 2min and

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then stabilises (Fig. 3). It appears that at 3μg/ml C6H, protons are being carried into the cell even

236

though the membrane is still intact. Thus C6H has protonophore activity and at high concentrations

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can act as a likely surfactant.

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C6H reduces internal ATP levels -2 min after the addition of a high concentration of C6H

239

(≥5μg/ml) the ATP level inside of the cell drops by 85% whilst the percentage of ATP outside of cells

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increases by ~40% (data not shown). This is consistent with the damage to the membrane, which

241

allows ATP to be released. With 3μg/ml C6H the cells lose around 93% ATP within 2 min incubation

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(Table 1) whilst the ATP outside of the cell only increases ~10% compared to the untreated sample

243

(data not shown). The drop in ATP levels could be due to the use of energy by the cell to restore the

244

ΔΨ and ΔpH and/or cessation of ATP synthesis due to loss of the proton gradient required for its

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production.

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Effect of C6H in combination with other inhibitors-

In order to further elucidate the potential

247

mechanism of C6H activity its effects were determined in combination with inhibitors of known

248

function. The protonophore CCCP (carbonyl cyanide m-chloro phenyl hydrazone) is a very powerful

249

uncoupling agent that carries protons across the membrane resulting in loss of both ΔpH and ΔΨ (37).

250

C6H and CCCP have an additive effect on S. aureus killing (Table 2), with an associated drop in ATP

251

levels (Table 1).

252

Valinomycin is a potassium carrier, which equilibrates intra- and extracellular levels. It affects

253

ΔΨ and can either depolarise or hyperpolarise the cells dependent on extracellular K+ levels. When

254

valinomycin was used alone, this resulted in only a small loss of ATP and when used in combination it

255

prevents the drastic loss seen by C6H alone (Table 1).

256

hyperpolarisation in contrast to C6H (Fig. 2C) and in combination, the membrane becomes transiently

10

Valinomycin leads to membrane

Bactericidal activity of human skin fatty acid

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hyperpolarised for 5 min prior to a slow return to control levels. With the combination of inhibitors

258

there is also an additive effect in terms of S. aureus killing (Table 2). Addition of KCl significantly

259

reduces the bactericidal affect of both C6H and valinomycin (Table 2).

260

DCCD (dicyclohexylcarbodiimide) is a direct inhibitor of the ATPase and affects the ΔpH.

261

DCCD causes significant death of S. aureus (Table 2) but when used in combination with C6H there

262

is no increase in killing. In addition DCCD alone only results in a small loss of ATP and in

263

combination with C6H more ATP is maintained than with C6H alone (Table 1). DCCD inhibits the

264

activity of the ATPase thus preventing the use of ATP whilst extruding protons. As DCCD treated

265

cells do not lose a significant amount of ATP under the conditions used in 20 mM Mes pH 5.5 (Table

266

1, P value 0.58) it would appear that the cells are not metabolically active in these conditions.

267

C6H inhibits the electron transport chain (ETC) - The effect of C6H on the ETC was studied

268

using inverted vesicles and iodonitrotetrazolium chloride (INT; (28)). INT is reduced by almost all the

269

components of the ETC forming iodonitrotetrazolium violet formazan (INF), which can be

270

colorimetrically quantified. NADH or succinate substrate was added to generate the electron flow.

271

Inhibition of the ETC downstream the site of INT reduction, i.e. closer to the terminal oxidase

272

(complex IV) should either increase or not affect the amount of formazan compared to control (28).

273

The effect of C6H on the ETC with Escherichia coli inverted vesicles is shown in Fig. 4 and was

274

confirmed with Micrococcus flavus inverted vesicles (data not shown). Inhibition of the first

275

components of the ETC, complex I by rotenone in the NADH reaction and complex II by malonate

276

when succinate was used as substrate, resulted in a decrease of INF formed whereas inhibition of

277

complex IV by sodium azide resulted in increased amount of INF (Fig 4).

278

produced higher amounts of formazan. However, no effect of the C6H was seen in the absence of an

279

electron flow, for instance when used in combination with rotenone or malonate. Moreover a

280

cumulative effect in combination with NaN3 was observed suggesting that C6H interferes with the

281

electron flow through the ETC. Confirmation will require the establishment of the assays using the

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native S. aureus system.

283

Effect of C6H on external ion levels - Ion chromatography (IC) was used to determine the effects of

284

inhibitors (C6H and CCCP) on ion levels. Of the extracellular ions tested all were unchanged (data not 11

Similar to NaN3, C6H

Bactericidal activity of human skin fatty acid

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shown) apart from K+, in the presence of inhibitors. As expected CCCP leads to K+ extrusion (6.49

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+/-0.02 and 2.67+/-0.15 ppm for the CCCP treated and control respectively ), which most likely occurs

287

during re-establishment of the membrane potential. C6H also results in significant release of K+

288

(4.47+/-0.14 ppm; P value

Bactericidal activity of the human skin fatty acid cis-6-hexadecanoic acid on Staphylococcus aureus.

Human skin fatty acids are a potent aspect of our innate defenses, giving surface protection against potentially invasive organisms. They provide an i...
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