Review
For reprint orders, please contact
[email protected] Affinity biosensors for tumor-marker analysis
The use of cancer biomarkers is emerging as one of the most promising strategies for early detection and management of cancer. Biosensors can provide advanced platforms for biomarker analysis with the advantages of being easy to use, inexpensive, rapid and offering multi-analyte testing capability. The intention of this article is to discuss recent advances and trends in affinity biosensors for cancer diagnosis, prognosis and even theragnosis. The different types of affinity biosensors will be reviewed in terms of molecular recognition element. Current challenges and trends for this technology will be also discussed, with a particular emphasis on recent developments in miRNA detection.
Even if overall cancer death rates continue to decrease in the United States [1] and Europe [2] , cancer is still a leading cause of death. In 2014, it is estimated that there will be 1,665,540 new cases of all cancer sites and an estimated 585,720 people will die of this disease in United States, as reported by the Surveillance Epidemiology and End Results Program of the National Cancer Istitute. In 2012 in Europe, there were just over 3.4 million new cases of cancer (excluding nonmelanoma skin cancers) [3] , and the estimated total number of cancer deaths was 1.75 million, of which 56% were in men and 44% in women. Cancer is not just one disease but many diseases. There are more than 100 different types of cancer affecting over 60 human organs. Following statistics, in Europe in 2012 the most common primary cancer sites in men were prostate, lung, colorectal and bladder. In women, breast cancer was by far the most frequently diagnosed neoplasm, followed by colorectal, lung and corpus uteri cancers. Lung cancer, with an estimated 353,000 deaths (a fifth of the total) was the most frequent cause of death from cancer in Europe in 2012, followed by colorectal cancer, breast cancer and stomach cancer [3] . In cancer, genetic and epigenetic alterations can cause the onset of the disease and
10.4155/BIO.14.247 © 2014 Future Science Ltd
Ilaria Palchetti Dipartimento di Chimica, Università degli Studi di Firenze, Via della Lastruccia 3, 50019 Sesto Fiorentino (Fi), Italy
[email protected] the formation of cancer cells which will exhibit higher growth capability than normal mammalian cells. Unlimited cell division, invasion of nearby tissues, metastasis to distant organs, resistance to antigrowth signaling, evasion of apoptosis and sustained angiogenesis are typical features of cancer. Mutations arising in somatic cells account for most cancers and are frequently caused by many environmental factors such as the exposure to carcinogenic chemicals, hormones, radiations, bacterial or viral infections. Many other factors in diet and lifestyle may cause or prevent cancer. The genes that are altered in somatic cells to cause cancer are referred to as oncogenes or tumor suppressor genes. Oncogenes, when mutated or modified, stimulate abnormal cell survival and division. Tumor suppressor genes are lost in cancer resulting in loss of control of cell growth. Genetic alterations can occur at different levels. Changes in single bases within the DNA sequence, DNA replication errors that add or delete bases, malfunction of the DNA mismatch repair genes or deletion or amplification of DNA sequences (ranging from short sequences to large portions of chromosomal arms) are examples of genetic alterations that can lead to cancer initiation. In addition, many
Bioanalysis (2014) 6(24), 3417–3435
part of
ISSN 1757-6180
3417
Review Palchetti
Key terms microRNA: microRNAs are an important class of short, noncoding (approximately 22 nucleotides in length) endogenous RNAs Biosensor: A biosensor is a compact analytical device, capable of providing specific quantitative or semiquantitative analytical information using a biological or biologically derived recognition element, which is in direct spatial contact with a transducer element. Cancer biomarker: Cancer biomarkers are molecular changes that can be detected in the tumor or in the blood, urine, or other body fluids of cancer patients.
chromosomal changes (i.e., increased or decreased number of chromosomes and chromosomal rearrangements) have been identified in cancer cells. Epigenetic alterations are modifications of DNA that affect gene expression without altering DNA nucleotide sequences, such as DNA methylation, histone modifications or nucleosome positioning. Modifications in noncoding RNAs expression, specifically in microRNA expression, are other examples of epigenetic alterations [4] . Cancers are described by their pathological grade and clinical stage. Knowing the stage of disease helps the doctor plan treatment and estimate the person’s prognosis. Historically, the most important cancer diagnostic and prognostic indicators are morphological and histological characteristics of tumors. The development of molecular profiling technologies to produce ‘molecular signatures’ provides the potential to tailor medical care, both at tumor and patient levels. Delivering the right dose for the right indication to the right patient at the right time [5] might be possible using these approaches. Personalized cancer therapy allows increasing therapeutic efficacy while at the same time decreasing inadvertent toxicity [5] . Biosensors can enter this scenario providing specific, easy-to-use, cost-effective and rapid diagnostic tools [6–9] . Herein, the main features, the current challenges and future trends of biosensor technology for cancer biomarker detection will be discussed. The different types of affinity biosensors will be reviewed in terms of molecular recognition element. Cancer biomarker: definition & general considerations As reported by the National Cancer Institute (NCI) dictionary of cancer terms, “A biomarker is a biological molecule found in blood, other body fluids or tissues that is a sign of a normal or abnormal process, or of a condition or disease.” Cancer biomarkers encompass a wide variety of molecules including proteins (e.g., enzymes, antibodies or receptors), nucleic acids (NAs), hormones and
3418
Bioanalysis (2014) 6(24)
peptides. A biomarker can also be a collection of alterations, such as gene expression, proteomic and metabolomic signatures [10] . Biomarkers can be found in blood (either total blood, serum or plasma) or other biological fluids like urine or sputum, and thus easily assessed, or can be tissue-derived and require either biopsy or special imaging for evaluation. Biomarkers can be used in multiple clinical settings, not only to identify the presence of a tumor but also to estimate the risk of disease or to screen for occult primary cancers, to distinguish benign from malignant findings or cancer status and subtype, to detect recurrence or determine response to therapy [10,11] . A list of some biomarkers and examples of their role in clinical settings are given in Table 1. Some biomarkers are only used in a specific setting, whereas others can serve more than one purpose. Recently, most of the attention concerning molecular cancer diagnostics in the clinical setting has been focused on predictive biomarkers of response to therapy. Indeed, the success of personalized cancer therapy depends on having accurate diagnostic tests that identify patients who can benefit from targeted therapies [11,12] . A classic example is that of breast cancer: clinicians now commonly use diagnostics to determine which breast tumors overexpress the HER2, which is associated with a worse prognosis but also predicts a better response to the medication trastuzumab [13] . Tests for HER2 and other biomarkers are approved along with the drugs (as ‘companion diagnostics’) so that clinicians can better target patient’s treatment. Moreover, differential diagnosis or evaluation of recurrence of the disease is another important clinical application of molecular diagnostics in oncology. For example, molecular analysis of softtissue sarcomas is emerging as a critical tool for their differential diagnosis. Such analysis includes SS18SSX, EWSR1 and PAX3/7- FKHR fusion proteins in synovial sarcomas, Ewing’s sarcoma, alveolar rhabdomyosarcomas, respectively [12,13] . Another important aspect of molecular diagnostics is the analysis of prognostic markers in certain malignancies such as the recurrence risk stratification using the OncotypeDx and Mammaprint gene expression signatures in breast cancer, or the IHC4 immunohistochemistry method that measures the expression of the estrogen receptor, the progesterone receptor, human EGFR2/HER2 and Ki-67 [12] . The emerging need in cancer diagnostics is to move away from single biomarker analysis. It is necessary, instead, to perform ‘panel testing’ for a variety of biomarkers on which predictive, diagnostic, therapeutic and prognostic assessment may be based. Some examples of multi-parameter assays have recently emerged, in which multiple analytes, such as expression of sev-
future science group
Affinity biosensors for tumor-marker analysis
Review
Table 1. Some biomarkers of breast and prostate cancer diseases with their role in clinical settings. The complete list of biomarkers can be found at NCI biomarker website. Biomarker
Cancer types
Tissue analyzed Role in clinical setting
CA15–3/CA27.29
Breast cancer
Blood
To assess whether treatment is working or disease has recurred
Calcitonin
Medullary thyroid cancer and breast cancer
Blood
To aid in diagnosis, check whether treatment is working, and assess recurrence
CEA
Colorectal cancer and breast cancer
Blood
To check whether colorectal cancer has spread; to look for breast cancer recurrence and assess response to treatment
ER/PR
Breast cancer
Tumor
To determine whether treatment with hormonal therapy (such as tamoxifen) is appropriate
HER2/neu
Breast cancer, gastric cancer and esophageal cancer
Tumor
To determine whether treatment with trastuzumab is appropriate
PSA
Prostate cancer
Blood
To help in diagnosis, assess response to treatment and look for recurrence
uPA and PAI-1
Breast cancer
Tumor
To determine aggressiveness of cancer and guide treatment
21-Gene signature (Oncotype DX)
Breast cancer
Tumor
To evaluate risk of recurrence
70-Gene signature (Mammaprint)
Breast cancer
Tumor
To evaluate risk of recurrence
CEA: Carcinoembryonic antigen; ER: Estrogen receptor; PAI: Plasminogen activator inhibitor; PR: Progesterne receptor; PSA: Prostate-specific antigen; uPA: Urokinase plasminogen activator.
eral genes, are measured, and a weighted algorithm is developed to generate a single result, index, signature or ‘score,’ like in OncotypeDx or Mammaprint, etc. [14] . Given the increasingly critical role of molecular analysis in cancer patient management, there is a clear need for developing robust, high-quality diagnostic tests and for their corresponding technical and clinical validation [12] . Thorough technical validation is a prerequisite for establishing the performance characteristics of a methodology. Evaluation of sensitivity, specificity, limit of detection (LOD) and accuracy should be included as part of a standardized framework for the validation and verification of clinical molecular tests. Affinity biosensors as diagnostic tools in cancer Biosensors are analytical devices incorporating a biological sensing element. They harness the exquisite sensitivity and specificity of biology in conjunction with physicochemical transducers to deliver complex bioanalytical measurements with simple, easy-to-use, cost-effective formats [15] . Biosensors are mainly classified according to the biological specificity conferring mechanism (catalytic
future science group
or affinity biosensors) or, alternatively, to the mode of physical-chemical signal transduction. Catalytic systems integrate enzymes, tissues or whole cells with transducers that act as biological catalysts for particular reactions. On the contrary, affinity biosensors, take advantage of different biological elements, such as antibodies, receptors or nucleic acids (NAs). In affinity biosensors, the binding between the target analyte and the immobilized biomolecule on the transduction element is governed by an affinity interaction under thermodynamic considerations, like the antigen-antibody (Ag-Ab), the DNA hybridization or the protein-NA binding. Regarding the transduction principles, biosensors can be classified as optical, electrochemical, mass, magnetic, calorimetric or micromechanical biosensors. Optical detection by fluorescence spectroscopy is a popular method, due largely to the ease with which biomolecules can be fluorescently labeled, the availability of many different fluorophores and quenchers [16] , and the inherent capability for real-time multiplex detection. Chemiluminescence is another optical technique widely used [17] . A different optical transduction, based on evanescent wave device, can offer real-time
www.future-science.com
3419
Review Palchetti label-free optical detection. These biosensors rely on monitoring changes in surface optical properties (shift in resonance angle due to change in the interfacial refractive index) resulting from the surface-binding reaction [18] . Electrochemical devices have also proved to be very useful, due to their inherent miniaturization, cost and compatibility with advanced microfabrication technology. Electrochemical detection usually involves monitoring a current response under controlled potential conditions. However other changes in electrochemical parameters such as capacitance, impedance and conductivity have been used [19,20] . In photoelectrochemical measurements, light is used to excite active species on the electrode and photocurrent is obtained as the detection signal. This technique has particularly benefited by the emergence of nanomaterials with enhanced photoelectrochemical properties. Quartz crystal microbalance transducers, comprising an oscillating crystal, can be used in label-free detection schemes, since the increased mass, associated with the biorecognition reaction, results in a decrease of the oscillating frequency. Micromechanical transduction is based on cantilevers; in this case biomolecular interactions can be detected via the bending of microfabricated cantilevers coated with bioreceptors. Finally, in magneto-biosensor, magnetic labels are used to detect magnetoresistance, giant magnetoresistive effect, spin-value giant magnetoresistive effect and other parameters. Biosensor technology has deeply benefited from the recent advances in nanotechnology. Several areas including transducers, labeling technology and manufacturing have been implemented by nanotechnology [21,22] . The use of nanomaterials may increase the sensitivity of a biosensor. Moreover, new detection schemes have been developed employing nanomaterials. For example, when metal nanoparticles, such as gold nanoparticles (AuNPs), modified with specific ligand interact with the target (i.e., a protein) the resulting nanoparticle aggregation may be measured by light absorption. AuNPs can also be used to scatter light of specific wavelengths. When functionalized AuNPs bind specific target proteins, the scattered light intensity or wavelength will change depending on the NP size, composition and on the degree of surface plasmon resonance (SPR). Moreover, miniaturization to nanoscale size, reduced cost of production, high throughputs are other examples of the advantages offered by nanotechnology. Some achievements in the use of nanoparticles to detect cancer biomarkers and cancer cells are well reviewed by Perfezou et al. [22] . Examples of optical, mechanical and magnetic nanosensors are recently reviewed by Swierczewska et al. [21] . The increasing number of publications over the last 10 years highlights the interest in biosensors, as diag-
3420
Bioanalysis (2014) 6(24)
nostic tools in cancer. Biosensors have several potential advantages over other methods of cancer analysis, especially specificity, increased flexibility, reduced costs and assay speed. In addition, biosensors can allow multi-target analyses, automation and reduced costs of testing. Biosensor-based diagnostics might facilitate cancer screening, improve the rates of earlier detection and facilitate a clear decision structure for patient management and prognosis. There are thousands of examples of affinity biosensors for cancer biomarker detection and this article cannot obviously review all. In this article, recently reported affinity biosensors, mainly within the past 5 years, will be reviewed. Moreover, since molecular recognition is a central event for most biosensors, this review will focus on the recent advances in designing the molecular recognition elements. The molecular recognition element The past few years have seen continued emphasis on antibody-based and hybridization-based biosensors. However, the emergence of new recognition approaches, most notably those based on aptamers and peptides, is bringing new perspectives in biosensor development. Interesting alternative approaches are, also, those based on phages, molecular imprinted polymers and carbohydrate affinity binding. These ligands are reviewed in the following sections. Antibody-based biosensors
Antibody-based biosensors, also called immunosensors, are inherently versatile in that antibodies specifically bind to individual compounds or groups of structurally related compounds with a wide range of affinities. Antibodies are the most used affinity proteins for all life science applications. They can be isolated to many targets with high affinity and specificity. The most used antibody type, the IgG molecule, is a 150 kDa protein composed of four polypeptide chains, two identical larger heavy chains and two identical shorter light chains [23] . A huge number of articles dealing with the development of antibody-based biosensor (or immunosensor) for cancer biomarker detection are reported in literature, confirming that antibodies are still one of the mainstay affinity elements. The main antibody formats used in immunoassays are polyclonal and monoclonal antibodies. Some examples of immunosensors for the detection of biomarkers using antibodies, as biomolecular recognition element, coupled to different transducing principles are reported in Tables 2 & 3. In particular, examples concerning the detection of carcinoembryonic antigen (CEA) and examples of biosensor formats
future science group
Affinity biosensors for tumor-marker analysis
for the prostate-specific antigen (PSA) detection are reported in Tables 2 & 3, respectively. CEA is a highly glycosylated cell surface glycoprotein, most often associated with colorectal cancer but also found at elevated levels in patients with breast cancer, ovarian cancer and lung cancer. The normal blood serum concentration of CEA in healthy individuals is less than 2.5 ng/ml, with increased levels suggesting the presence of a tumor. PSA is a commonly used but controversial biomarker for screening prostate cancer. A normal level of PSA is 4.0 ng/ml. PSA level between 4.1 and 9.9 ng/ml suggests the presence of prostate cancer. However, in addition to prostate cancer, elevated PSA levels may also indicate benign prostatic hyperplasia, prostatitis (inflammation of the prostate), or smaller tumors that do not prove to be fatal. Following its approval by the US FDA in 1986, increased screening of men over age 50 led to an increase in the diagnosis of prostate cancer, but there were concerns raised about overtreatment [10] . While antibodies are excellent ligands in terms of affinity and selectivity, they are expensive to produce, incompatible with some high-throughput approaches and often have limited shelf life [6] . Significant prog-
Review
ress has been made in developing stable recombinant antibody fragment libraries [24] ; however, valuable alternatives are still required. Nanobodies (Nbs) are single-domain antibody (sdAb) fragments formed by the variable domain of heavychain-only antibodies (HCAbs) found in camelids (e.g., dromedaries, llamas and alpacas) also known as VHH (for VH of HCAbs) [25] . However, similar functional antibodies devoid of L chains are also present in an assortment of nonmammals, such as sharks (Orectolobus maculates and Ginglymostoma cirratum) and ratfish [26] . In Figure 1 is reported a scheme of these immunomolecules. These sdAbs constitute the smallest domains of natural Abs having full antigen-binding capacity (molecular weights ranging between 12 and 14 kDa) and have demonstrated to be an advantageous alternative to monoclonal antibodies (mAbs). Nbs can be encoded by a single VHH gene segment and are produced in bacteria and yeast with less cost than conventional mAbs. Nbs are reported to be particularly suited for the development of biosensor because site-specific functional groups are easily introduced, allowing covalent and oriented binding with minimal loss of specific-
Table 2. Some examples of recent carcinoembryonic antigen immunosensor platforms. Transducer
Label/label-free
Detection limit
Ref.
SPR
Direct and sandwich assay
3 ng/ml
[105]
SPR
Au Nps
0.1 ng/ml
[106]
Electrochemical
Nanotubular mesoporous PdCu alloy
4.86 pg/ml
[107]
Electrochemical
AuPt nanochains – HRP
0.11 pg/ml
[108]
Electrochemical
Double-strand DNA-Au NP tag and hexaammineruthenium (III) chloride
3.2 fg/ml
[109]
Electrochemical
Label free
5 ng/ml
[110]
Electrochemical
Enzymatic label
0.2 ng/ml
[111]
Electrochemical
Ferrocene and HRP
0.01 ng/ml
[112]
Electrochemical
Nanogold magnetic particle
0.001 ng/ml
[113]
Electrochemical
Multiplexed Microfluidic device
0.5 pg/ml
Electrochemical
Label free
0.015 fg/ml
Electrochemical
Label free
6 fg/ml
[115]
Electrochemical
Au-ZnO nanoparticles
0.2 ng/ml
[116]
Electrochemical
Nanogold-enwrapped graphene nanocomposites
0.1 ng/ml
[117]
Electrochemical
Prussian Blue nanoparticles coated with poly(diallyldimethylammonium chloride) and double-layer gold nanocrystals
0.2 ng/ml
[118]
Photoelectrochemical
Multiwalled carbon nanotube-Congo redfullerene nanohybrids
0.1 pg/ml
[119]
Electrochemiluminescent
Label based: QD
0.4 pg/ml
[120]
Magnetic
Label based: magnetic beads
n.d.
[121]
[95] [114]
AUNP: Gold nanoparticle; HRP: Horseradish peroxidase; N.d. Not determined; QD: Quantum dots; SPR: Surface plasmon resonance.
future science group
www.future-science.com
3421
Review Palchetti ity and affinity [27] . The Nb small size provides highbinding capacity surfaces resulting in higher sensitivity, and the high stability and refolding competence of Nbs allow stringent washing and regeneration conditions. A PSA immunosensor based on a commercially available SPR chip and an sdAb, cAbPSAN7, derived from dromedary heavy-chain antibodies and identified after phage display is reported in [28] . Although PSA concentrations as low as 10 ng/ ml could be detected directly, this detection limit could be enhanced to PSA levels in the sub nanogram per milliliter range by introducing a sandwich assay involving a biotinylated secondary antibody and streptavidin-modified gold nanoparticles. Recently, Campuzano and Pingarron [29] described the development of two amperometric immunosensors for the determination of fibrinogen (Fib), a biomarker of bladder cancer, in human plasma involving a novel synthesized specific Nbs. The assay implied the use of disposable screen-printed electrodes and functionalized magnetic beads as solid supports to perform the immunological reactions. Two different competitive magnetoimmunosensing configurations (direct and indirect) were developed and their applicability compared. The immunosensor was successfully employed for the analysis of a commercial plasma sample with certified Fib content. Furthermore, in order to find alternatives to antibodies, different and very promising avenues of investigation have been pursued including NA aptamers and artificial combinatorial proteins and peptides. The next two paragraphs are dealing with these topics.
Aptamer-based biosensors
Aptamers are single-stranded DNA or RNA ligands, which can be selected for different targets starting from a huge library of molecules containing randomly created sequences. The selection process is called systematic evolution of ligands by exponential enrichment (SELEx). The SELEx process involves iterative cycles of selection and amplification starting from a large library of oligonucleotides with different sequences (generally 1015 different structures). The number of cycles required depends on the stringency conditions, but once obtained and once the sequence is known, unlimited amounts of the aptamer can be easily achieved by chemical synthesis. In addition to this very important aspect of having an unlimited source of identical affinity recognition molecules available, aptamers can offer advantages over antibodies that make them very promising for bioanalytical applications [30] . The main advantage is the overcoming of the use of animals or cell lines for the production of the molecules. The aptamer selection process is faster than other methods and can be manipulated to obtain aptamers that bind a specific region of the target and with specific binding properties in different binding conditions. After selection, aptamers are produced by chemical synthesis and purified to a very high degree by eliminating the batch-to-batch variation found when using antibodies. By chemical synthesis, modifications in the aptamer can be introduced enhancing the stability, affinity and specificity of the molecules. Several aptamers have already been developed against cancer-related proteins, like CEA [31] , and have been adapted for numerous biosensing principles
Table 3. Some examples of recent prostate-specific antigen immunosensor platforms. Transducers
Label/label-free
Detection Limit
Ref.
SPRi
Quantum dots
100 pg/ml
[122]
Electrochemical
Label-based: graphene sheet sensor platform and ferrocene functionalized iron oxide nanoparticle
2 pg/ml
[123]
Electrochemical
Logic based device
n.d.
[124]
Electrochemical
Sandwich assay
5 pg/ml
[125]
Electrochemical
Sandwich assay based on magnetic beads
1.7 ng/ml
[126]
Electrochemical
Sandwich assay based on graphene and HRP
1 pg/ml
[127]
Field Effect Transistor
Label-free: graphene oxide
100 fg/ml
[128]
Colorimetric
Paper-based colorimetric biosensing platform
n.d.
[129]
Magnetic
Label free
100 pg/ml
[130]
Piezoelectric
Label free
0.25 ng/ml
[131]
SPR and Quartz Crystal Microbalance
Label based: Au nanoparticles
0.29 ng /ml
[132]
8 pg/ml
[133]
Electrochemiluminescence Sandwich assay using glucose oxidase and luminol HRP: Horseradish peroxidase; N.d.: Not determined; SPRi: Surface plasmon resonance imaging.
3422
Bioanalysis (2014) 6(24)
future science group
Affinity biosensors for tumor-marker analysis
A
B
Nb
VL
V
H
scFv
Review
V H
H
V
H
H
V H
V
VL
CH2
CH2
Fc
CH3
Fc
C
D
sdAb
R
C3
C3
C3
C4
C4
C4
C5
C5
C5
C6
C6
C6
C4
C3 C5 C6
C2
N V-
A
L
C
CL
C2
AR
N V-
1
C
CL
C2
L
V
VL
V
H
H
V
AR
N V-
C2
CH2 CH3
CL
CH3
CH2
L
CH3
H
1
H
C C
Fab
VH
H
L V
1 CH
Figure 1. Scheme of immuno-molecules in different animal species. (A) Conventional mammalian IgG antibodies; (B) camelid heavy chain-only antibodies; (C) cartilaginous fish IgW and, (D) shark Ig-NARs. The smallest practical antigen-binding entity of IgG, the scFv, is also shown, as well as the single-domain antigen-binding fragments of the camelid heavy chain only antibodies and shark Ig-NAR, known as nanobody and V-NAR (sdAb), respectively. C: Constant domain; CH: Constant domain of the heavy chain; CL: Constant domain of the light chain; Nb: Nanobody; sdAb: Single-domain antibody; VH: Variable domain of the heavy chain; VHH: N-terminal variable domain of the heavy chain-only antibody; VL: Variable domain of the light chain; V-NAR: Variable antigen-binding domain. Reprinted with permission from [23] © Elsevier (2009).
future science group
www.future-science.com
3423
Review Palchetti
Key term Circulating tumor cells: Tumor cells that escape from the primary tumor into the bloodstream and travel through the circulatory system to distant sites where they develop into secondary tumors.
mainly in direct and sandwich formats than in competitive formats. Excellent reviews have been published, covering the application of aptamer biosensing in medicine studies [30,32–35] , and we ask the reader to refer to these reviews to find more examples of the different sensing procedures. In recent years, aptamer-based biosensors have been frequently proposed for monitoring cancer cells in peripheral blood. Tumor cells that escape from the primary tumor into the bloodstream and travel through the circulatory system to distant sites where they develop into secondary tumors are called circulating tumor cells (CTCs). These are the cells that cause metastasis. The discovery of CTCs is considered as a milestone in cancer research that is shedding light on the mechanisms of cancer progression. During the last decade, there has been considerable discussion about monitoring CTCs for the purpose of early cancer detection and prediction of treatment outcome. However, the potential use of CTCs as prognostic markers is still controversial [36] . The selection procedure known as cell-SELEx [37] , and its refinements [38] , is particularly useful for the identification of aptamers that are able to bind to their cognate target on the cell surface membrane. Aptamers evolved by cell-SELEx have been conjugated with suitable labels [39] for the different transducing principles. For example, gold nanoparticles have been used to develop a colorimetric assay [40] , able to detect a minimum of 800 cells with a portable strip reader within 15 min in human blood. Moreover, many electrochemical [41,42] , photoelectrochemical [43] and electrochemiluminescent [44] biosensor formats have also been used for the detection of CTCs. Engineered protein-based & peptide-based biosensors
The increasing experience in the field of combinatorial libraries and protein engineering has inspired researchers to develop new nonimmunoglobulin affinity protein without the limitations of antibodies. Consequently, today antibodies are facing increasing competition from a large number of so-called engineered protein scaffolds [30] . There are presently approximately 50 suggested protein scaffolds reported and these have been intensely reviewed over the last years [45,46] . Example of nonimmunoglobulin proteins that can be used in biosensors are the Affibody ® molecules, based on the immunoglobulin binding B
3424
Bioanalysis (2014) 6(24)
domain of protein A from the bacteria Staphylococcus aureus [45] . Affibody molecules able to recognize HER2 or TNF-α have been selected and are already commercially available. Furthermore, many peptide ligands that are able to target specific cancer biomarkers have been selected [47] and used in biosensors [48,49] . Methods that have been developed to identify peptide ligands include phage display libraries, synthetic library methods requiring deconvolution, one-bead-one-compound combinatorial libraries and others. Phage display technology is a powerful technique for ligand selection. Peptides have been isolated that target tumor-associated molecules such as receptors, vasculature components, lipids and carbohydrates. Examples of phage display derived tumor targeting peptides are described by Deutscher et al. [47] . Peptides can be chemically synthesized in large quantities once the optimal peptide with the required affinity has been identified. However, peptides have relatively lower affinity when compared with antibodies. Therefore designing the assay is important for developing successful sensing methods when incorporating peptides in biosensors [7] . Research in the development of higher affinity peptide as ligands is still in evolution [47] . Bacteriophage-based biosensors
Bacteriophages (phages) are traditionally used for the development of phage display technology. Recently, not only have the peptides displayed on phage been employed, but the phage themselves have been used in biosensing [50,51] with a number of transducer platforms. Furthermore, their nanosized dimensions and ease with which genetic modifications can be made to their structure and function have put them in the spotlight toward their use for in vivo imaging and sensing [51,52] . Regarding biosensor development, phages can be grouped into the following categories regardless of their filamentous or icosahedral classification (Figure 2) [50,53] : nonlytic phages (i.e., M13) displaying the target-specific peptides or proteins that can be used as a target-recognizing sensing probe as antibody substitutes; phages to be used in phagedisplay to select target-recognizing peptides, proteins or antibodies that can be chemically synthesized or genetically produced, and directly used as probes; lytic phages (T4 or T7) that can act as bacteria-sensing probes by breaking its bacteria host strain specifically and releasing the cell-specific contents from the bacteria, thereby leading to the detection of the specific bacteria strain; and the phage nanofibers that can be conjugated with other organic or biological molecules and/or assembled with other nanomaterials to form a composite device that can be respon-
future science group
Affinity biosensors for tumor-marker analysis
sive to some external stimuli (nanoscaffolding material). Examples of phage-based biosensors for cancer biomarkers are reported in literature [53] . Molecularly imprinted polymers
Molecularly imprinted polymers (MIPs) are an interesting class of synthetic molecules for biosensor development. MIPs are synthetic polymeric materials with specific recognition sites complementary in shape, size and functional groups to the template molecule, involving an interaction mechanism based on molecular recognition. These recognition sites mimic the binding sites of biological entities such as antibodies. In particular, in MIPs production, functional and cross-linking monomers are copolymerized in the presence of a target analyte (the imprint molecule), which acts as a molecular template. The imprint molecule, initially, forms a complex with the functional monomers, and after polymerization, their functional groups are held in position by the highly cross-linked polymeric structure. Subsequent removal of the imprint molecule reveals binding sites that are complementary in size and shape to the analyte. Due to their synthetic nature, their stability, ease of preparation and low cost, MIPs have found numerous analytical applications including sensing. MIPs can be prepared according to a number of approaches that are different in the way the template is linked to the functional monomer and subsequently to the polymeric-binding sites. Thus, the template can be linked and subsequently recognized by reversible covalent bonds, metal ion coordination or noncovalent bonds. The covalent approach is interesting because of the higher stability of the prepolymerization complex. However, the most widely applied technique to generate molecularly binding sites is based on noncovalent self-assembly of the template with functional monomers prior to polymerization with cross-linking monomer and then template extraction followed by rebinding via noncovalent interactions [54,55] . Different methods used for developing proteinimprinted polymers and their incorporation with a number of transducer platforms with the aim of identifying the most promising approaches for the preparation of MIP-based protein sensors have recently been reviewed [54,55] . Recently Wang et al. developed sensing elements for the detection of CEA (detection range 2.5–250 ng/ml) [56] , while Viswanathan et al. [57] developed a protein-imprinted polymer for the electrochemical detection of epithelial ovarian cancer antigen-125 (CA 125), reporting a detection limit of 0.5 U/ml. Sugar-based biosensors
The surface of a cell comprises thousands of different lipids, proteins and carbohydrates. Furthermore, many membrane lipids and proteins are conjugated to
future science group
Review
polysaccharides, which comprise the glycocalyx of all cells. The cell surface glycan expression is considered a good candidate marker to distinguish the different expression profiles during a variety of cell biological processes [58] . The link between glycan structures and cancer has received particular attention, and glycobiology has become a new tool for cancer therapeutics and diagnostics. Some examples of biosensors devoted to detecting carbohydrate-relevant species have been reported in literature [59] , in many cases coupled to nanomaterials [60] . Hybridization-based biosensors
In the last decades, NA-based biosensors have gained much interest in various clinical applications. An NA biosensor is defined as an analytical device incorporating an oligonucleotide, even a modified one, with a known sequence of bases, or a complex structure of NA (like DNA from calf thymus) either integrated within or intimately associated with a signal transducer [61] . NA biosensors can be used to detect DNA/ RNA fragments or either biological or chemical species. Most NA biosensors are based on the highly specific hybridization of complementary strands of DNA or RNA molecules; this kind of biosensor is also called a genosensor [62] . The probe, immobilized onto the transducer surface, acts as the biorecognition molecule and recognizes the target DNA/RNA, while the transducer is the component that converts the biorecognition event into a measurable signal. Assembly of numerous (up to a few thousands) DNA biosensors onto the same detection platform results in DNA microarrays (or DNA chips), devices, which are increasingly used in clinical diagnostic. In NA biosensors, the detection of the hybridization event has been carried out through different detection technologies, from label free methods, such as piezoelectric and surface plasmon resonance (SPR) transduction, to other methods often requiring labels, such as electrochemical techniques. Several reviews have recently appeared in the literature [16,63–66] elucidating all the critical aspects related to the transduction step. As the specificity of the hybridization reaction is essentially dependent on the biorecognition properties of the capture oligonucleotide, design of the capture probe is undoubtedly the most important pre-analytical step. The probes can be linear oligonucleotides or structured (hairpin) oligonucleotides, which are being used with increasing frequency [65,67] . Peptide NAs (PNAs) and locked NAs (LNAs) are frequently used in DNA biosensor to develop the capture probe sequence [68] . PNAs are DNA mimics in which the nucleobases are attached to a neutral
www.future-science.com
3425
Review Palchetti
A
B Head
Tail
Figure 2. Some examples of bacteriophages. (A) Transmission electron microscopy image of a Multiple M13 bacteriophages and (B) schematic of an icosahedral bacteriophage drawn by ChemDraw. Reprinted with permission from [53] © John Wiley & Sons (2009).
N-(2-aminoethyl)-glycine pseudopeptide backbone, whereas LNA is an NA analog of RNA, in which the furanose ring of the ribose sugar is chemically locked by the introduction of a methylene linkage between 2′-oxygen and 4′-carbon. In addition to specificity, sensitivity is also a key factor in the performances of a biosensor: sensitive detection of specific gene sequence on the basis of the hybridization reaction can be achieved by increasing the probe immobilization amount and controlling over the molecular orientation of the probes. Nanomaterials have been increasingly introduced in the fabrication of biosensors for this purpose, in order to increase the immobilization amount of the DNA probe and to magnify the detection signal and lower the detection limit. The use of a label may also help to improve sensitivity. The experimental variables affecting the hybridization event at the transducer–solution interface are referred to as stringency and they generally include hybridization and posthybridization washing buffer composition and reaction temperature. In recent years, different genosensor formats have been applied to a multitude of genetic diseases including cancer. An emergent challenging area in clinical diagnostics is that of miRNA detection. Some examples of genosensors for miRNA analysis are reported in the following section. An emerging application: miRNA determination
miRNAs (miRs) are naturally occurring small RNAs (approximately 22 nucleotides in length) [69] that act as regulators of protein translation. Because many diseases are caused by the misregulated activity of proteins, miRNAs have also been implicated in a number of diseases including a broad range of cancers [70] . Consequently, miRNAs are intensely studied as candidates for diagnostic and prognostic biomarkers. Moreover, the ability to selectively regulate protein activity
3426
Bioanalysis (2014) 6(24)
through miRNAs could play a role in the treatment of many forms of cancer and other serious illness [70] . miRNAs have a peculiar biogenesis [71] (Figure 3) . Initially, miRNAs are part of a larger piece of RNA (primary-miRNA or pri-miRNA or primiR) containing stem-loop structures that may contain multiple potential miRNAs. Pri-miRNAs are transcribed by RNA polymerase II or III, which are subsequently processed in the nucleus by the RNase III endonuclease Drosha and DGCR8 (the ‘microprocessor complex’) to form intermediate stem–loop structures approximately 70 nucleotides long called ‘precursor miRNAs’ (pre-miRNAs or pre-miRs). These pre-miRNAs fold to form imperfect stem–loop structures that are transported with the help of Exportin-5 from the nucleus to the cytoplasm, where they undergo further processing by another RNase III endonuclease, Dicer. Dicer removes the loop of the pre-miRNA to produce an imperfect duplex (miR:miR*) made up of the mature miRNA (miR) sequence and a fragment of similar size (miRNA* or miR*), which is derived from the opposing arm of the pre-miRNA. The miRNA strand of the duplex is loaded onto the RNA-induced silencing complex (RISC); the miRNA* separates from the duplex and is degraded [70] . There are several methods for detecting miRNAs, mostly relying on hybridization [72] . The most standardized and widely used method to detect miRNAs is northern blotting. In this method, the sample containing miRNAs is run on an electrophoresis gel. Then, the miRNAs are transferred to a nitrocellulose membrane, followed by soaking in a solution containing a fluorescent or radiolabeled oligonucleotide probe which is complementary to the target miRNA for hybridization to occur. After nonhybridized DNA has been removed, the miRNA target can be detected. Unfortunately, the low sensitivity, the time consuming and the laborious procedures make northern blotting difficult for routine miRNA analysis in a clinical setting. Moreover, northern blotting is not considered high throughput. Currently, the most widely used high-throughput method to detect miRNAs is through microarray. Microarrays permit the simultaneous detection of hundreds of miRNAs per time. A set of oligonucleotide capture probes are spotted on glass slides, and a sample of extracted RNA enriched for small molecule RNAs is allowed to hybridize with the capture probes. The most important disadvantage of microarray technologies resides in the nonquantitative nature of this method, which, therefore, requires further experimental validation [70] . Quantitative real-time PCR is becoming a popular method to detect miRNAs due to its high level of sensitivity (only a few picograms of miRNAs are required), accuracy and ease-of-use. In general, the target miRNA
future science group
Affinity biosensors for tumor-marker analysis
is first reverse transcribed into its cDNA, which will subsequently be amplified via PCR. However, the simple translation in PCR is obscured by the small length of mature miRNAs that share the same length as normal PCR primers. Shorter primers are typically not useful, as they demand very low melting temperature that eventually affects the efficiency of PCR. Although several primer extension techniques have been suggested to combat the intrinsic shortcoming of mature miRNAs, a great deal of effort has been devoted to developing analytical methods for miRNA analysis that possess appropriate sensitivity, appropriate dynamic range and multiplexing capability without PCR. At this purpose, different biosensor platforms have been proposed [72–75] . Electrochemistry is an emerging technique for miRNA biosensing [76–78] . A search on the term ‘miRNA biosensor’ and a refining of the results for the term ‘electrochemical,’ using SciFinder®,
Review
revealed that papers focused on electrochemical biosensors are around 40% of all the papers on miRNA biosensors. Electrochemical detection of miRNA was first reported by Gao and Yang in 2006 [79] using electrocatalytic nanoparticle tags. The assay was based on a direct chemical ligation procedure involving a chemical reaction to tag. The nanoparticles catalyze the oxidation of hydrazine and enhance the detectability of miRNAs, thereby lowering the detection limit to femtomolar level. Labeling of miRNAs for electrochemical assay is often necessary for miRNA sensitive detection. Gao and Yu reported a miRNA labeling procedure that utilizes a chemical ligation to directly label miRNA, via a covalent bond, to an isoniazid-substituted osmium complex [80] . In a separate attempt, the same group made use of the Ru(PD)2 Cl2 (PD = 1, 10- phenanthroline-5,6-dione) electrocatalytic moiety to monitor the oxidation of
Nucleus Cytoplasm
Pol II Pri-miR 5´
3´
DGCR8 Drosha Exportin 5 3´
5´
5´ Helicase 3´
3´
Dicer Translational repression
5´
RISC Mature miR strand incorporated into RISC
mGpppG
AAA...An 3´UTR
7
mRNA cleavage
RISC
RISC mGpppG
AAA...An 3´UTR
7
RISC-independent functions Decoy activity
Translational activation RISC 5´UTR
Figure 3. Biogenesis and mechanisms of action of miRNAs: an overview. Reprinted with permission from [70] © John Wiley & Sons (2012).
future science group
www.future-science.com
3427
Review Palchetti
Table 4. Some examples of recent electrochemical miRNA biosensing platforms in label-free format. Transducing principles
miRNA
Limit of detection
Ref.
Square wave voltammetry
miR-141, miR-103, and miR-29b-1
650 fM
[134]
Electrochemical impedance spectroscopy
miR-let-7 a, miR-let-7 b, miR-let-7 c
1.0 fM
[135]
Cyclic voltammetry
miR-155
1.87 pM
[136]
Electrochemical impedance spectroscopy
miR-let-7 a, miR-let-7 b, miR-let-7 c
2.0 fM
[137]
Differential pulse voltammetry
mir-21
45 fM
[138]
Electrochemical impedance spectroscopy
miR-720, miR-let-7c, miR-1248
2.0 fM
[139]
Differential pulse voltammetry
miR-24
1 pM
[140]
Differential pulse voltammetry
miRNA-16, miRNA-15a and miRNA-660 4.3 pmole in 3 ml samples
[141]
Amperometry
miR- let7a
[142]
13.6 aM
hydrazine [81] . Both these biosensors were applied to the quantitation of miRNA in total RNA extracted from HeLa cells. Recently, Gao group [82] reported the use of ruthenium oxide (RuO2) nanoparticles initiated polymerization of 3,3′-dimethoxybenzidine and miRNA-templated deposition of an insulating poly(3,3′–dimethoxybenzidine) film. In a separate work by Peng, RuO2 nanoparticles tagged to target miRNA strands served as a catalyst for polymerization of aniline and the hybridized miRNA strands acted as templates for the deposition of PAn at the hybridized miRNA strands [83] . Enzymes have been used as label in many biosensor formats. Pohlmann et al. [84] used an esterase as amplifier in a gap-hybridization assay format. Another strategy for miRNA detection is through the use of an
electrochemically activated glucose oxidase (GOx) tag/ amplifer [85,86] . Yin et al. [87] reported a miRNA biosensor based on triple-signal amplification due to the immobilized graphene and dendritic gold nanostructure and subsequent monitoring of the reduction current as a result of the oxidation of hydroquinone by H2O2 and horseradish peroxidase. Bettazzi et al. reported an electrochemical method based on paramagnetic beads and alkaline phosphatase amplification [88] . Yang and colleagues [89] developed a biosensor based on palladium (Pd) nanostructured microelectrodes. Differential pulse voltammetry (DPV) was used to monitor the electrochemical reduction current of Ru3+ accumulated on the electrode surface after hybridization with the target miRNA. The signals observed with this reporter system (Ru3+) are amplified by the inclusion of ferricyanide, which can regenerate Ru3+
Table 5. Some examples of electrochemical miRNA biosensing platforms in label-based format. Transducing principles
Label
miRNA
LOD
Ref.
Differential pulse voltammetry
DNAzyme
miR-21
0.006 pM
[143]
Differential pulse voltammetry
Protein 19
miR-21
–
[144]
Differential pulse voltammetry
DNA concatamers
miR-21
100 aM
[145]
Differential pulse voltammetry
–
miR-let-7 a, miRlet-7 b, miR-let-7 c, miR122
98.9 fM
[146]
Differential pulse voltammetry and chronoAmperometry
MB - ALP
miR-222
7 pM
[88]
Square wave voltammetry and P19 protein electrochemical impedence spectroscopy
miR-21, miR-32, and miR-122
5 aM
[92]
Amperometry
HRP
–
1 fM
[147]
Amperometry
HRP
miR-122
10 aM
[148]
Differential pulse voltammetry
MB - Os(VI) complex
miR-522, miR-261 10 nM
[149]
Amperometry
AuNPs-ALP- p-AP
miR 21
[150]
3 fM
ALP: Alkaline phosphatase; AuNPs: Gold nanoparticles; HRP: Horseradish peroxidase; MB: Magnetic beads; pAP: Para aminophenol.
3428
Bioanalysis (2014) 6(24)
future science group
Affinity biosensors for tumor-marker analysis
chemically after its electrochemical reduction. After a 30 min hybridization, the detection of 10 aM of target was reported and the RNA extracted in a panel of RNA samples tested. Label-free detection schemes have been also reported. In 2007, Fan and colleagues [90] introduced a strategy for sensitive and label-free detection of miRNA based on conducting polymer nanowires. Zhang and colleagues [91] proposed a biosensor based on PNA capture probes immobilized on silicon nanowire. Resistance change measured before and after hybridization correlates directly to concentration of the hybridized target miRNA. A detection limit of 1 fM was obtained. Labib et al. [92] introduced a three-mode electrochemical biosensor that exploited the strong and nonsequence-specific binding of a p19 fused dimer protein to double-stranded miRNAs and incorporated three modalities based on hybridization, p19 protein binding and protein displacement. Some examples of electrochemical biosensor based assays, recently reported in literature, can be found in Tables 4 & 5. Field effect, photoelectrochemical and electrochemiluminescent phenomena will be not reviewed here, since we focused only on classical electrochemical transduction principle, even if these techniques have been applied for miRNA determination. Examples of label-free detection are reported in Table 4, while several label-based approaches are reported in Table 5. The works reviewed show that miRNA diagnostics is becoming an increasingly relevant field of application of biosensor technology. Nevertheless, most of the current biosensor-based assays show a lack of reliable validation in clinical samples. Current challenges of affinity biosensors for cancer-related diagnostics One of the main challenges for biosensors is their implementation as point of care (POC) tools. POC systems are viewed as integrated systems that can process clinical samples for a number of different types of biomarkers in a variety of settings, such as clinical laboratories, operating theaters, doctor’s offices and eventually at home, providing opportunities for rapid screening of at-risk patients, surveillance of disease recurrence and better monitoring of treatment. Miniaturization of biosensor devices is of fundamental importance to reach this goal. Miniaturization allows for a large number of analyses to be made, also in a multiplexed format (i.e., analyses of different analytes simultaneously), using less reagents, time and effort. Most biological assays require labor-intensive and time-consuming processes, including incubation steps, washing steps, preconcentration steps, addi-
future science group
Review
tional reagents, which can be time consuming. The integration of biosensors in microfluidic platforms helps the miniaturization goal, reducing the assay time and sample and/or reagent consumption as well and serving automation purpose [93] . This fact is really important in order to reach widespread pointof-care use. Another important issue that can be easily covered by microfluidics is the possibility of multiplexed analysis [94–97] . An interesting electrochemical approach is that reported by Maholtra et al. [96] for the simultaneous detection of IL-6, IL-8, VEGF and VEGF-C [96] in human serum, with detection limits in the range of 5−50 fg/ml. Magnetic transducers have also been applied to the sensitive detection of different cancer biomarkers in a diverse range of biological fluids [98] in a microfluidic setting. However, significant challenges have to be overcome before biosensor-based point-of-care devices for cancer diagnosis become a reality [94,99] . Accuracy is, obviously, together with sensitivity, selectivity and precision, an important parameter that should be carefully controlled through validation processes, before a new device will find application. If a multitude of intriguing detection schemes has been reported in literature, also for in vivo diagnostics, it should be noted that extensive validation in clinical samples is not always reported. Surely, before application of any assay, including biosensors, in cancer diagnosis, prognosis and theragnosis, there is the need to ensure robust technical and clinical validation of the developed bioassays and biosensors and preferably within the context of randomized clinical trials in which the detection of particular molecular biomarkers by means of a particular methodology can be clearly linked to patient outcome. Conclusion Thousands of biosensor-based assays for the detection of cancer biomarkers have been reported in literature so far, highlighting the importance of biosensor technology in this field. The increasing number of new biological derived semisynthetic or synthetic receptors is allowing the development of more robust, versatile and stable biosensors, while nanotechnologies are facilitating highly sensitive and innovative transduction of the binding event. Our concluding remark regards commercialization of biosensors and their application to practical clinical analysis. Commercialization of biosensors has not yet maintained pace with the large amount of research activity. Several are the reasons of this phenomenon [8,9] . Both cost and technical issues are
www.future-science.com
3429
Review Palchetti slowing down the commercialization of new devices. However, it is important to continue working on biosensor technologies, to allow a successful transition from the research laboratory to clinical settings. Future perspective The literature reviewed in this paper demonstrates that biosensors are capable of characterizing and quantifying cancer-related biomolecules and even cancer cells. The identification of candidate cancer drugs and candidate cancer biomarkers [100] are other scenarios that will be benefit from biosensor features and from the discovery of innovative biorecognition elements [101–104] . Recently, aptamers, evolved from improved SELEx process, have been proposed for multiplexed proteomic technology for novel biomarker discovery. Furthermore, aptamers, engineered proteins and other nature inspired molecules are themselves candidates as cancer drugs or for drug release strategies. The coupling of these molecules with new nanomaterials and nanocomposites will offer exciting possibili-
ties for hybrid devices that combine both diagnostic and therapeutic components and will be important for in vivo diagnostics and for in vivo monitoring of therapy outcomes. As already stated, work remains to be done before biosensors can be used in cancer clinical practice. Miniaturization will still be an important issue in this sense. However, the future is bright for producing microfluidic, multiplexed tools, within the next decades, which can be used as point-of-care cancer diagnosis and therapy. Financial & competing interests disclosure The author has no relevant affiliations or financial involvement with any organization or entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript. This includes employment, consultancies, honoraria, stock ownership or options, expert testimony, grants or patents received or pending or royalties. No writing assistance was utilized in the production of this manuscript.
Executive summary • Affinity biosensors might be powerful tools for cancer diagnosis, prognosis and theragnosis. • Biological, semisynthetic or synthetic bioreceptors with different affinities, specificity and chemical composition toward cancer biomarkers are nowadays available. • Antibodies still play an important role for the detection of proteins, like prostate-specific antigen or carcinoembryonic antigen, hormones and other cancer-related molecules. • Aptamers, engineered proteins, peptides and molecularly imprinted polymers are promising candidates in the development of synthetic or semisynthetic ligands that can deliver the sensitivity and selectivity of biological systems with an increased stability. • Glycans/carbohydrates are emerging new receptors to study glycan expression profiles in cancer cells. • Nucleic acid biosensors are especially used for the detection of marker genes. A challenging field of applications of nucleic acid based biosensors is microRNA determination. • A current challenge for biosensor technology is the implementation as point of care tool. Microfluidics can help to reach this goal. 5
Gonzalez-Angulo AM, Hennessy BT, Mills GB. Future of personalized medicine in oncology: a systems biology approach. J. Clin. Oncol. 28(16), 2777–2783 (2010).
Edwards BK, Noone AM, Mariotto AB et al. Annual report to the nation on the status of cancer, 1975–2010, featuring prevalence of comorbidity and impact on survival among persons with lung, colorectal, breast, or prostate cancer. Cancer 120(9), 1290–1314 (2014).
6
Rasooly A, Jacobson J. Development of biosensors for cancer clinical testing. Biosens. Bioelectron. 21(10), 1851–1858 (2006).
7
Tothill IE. Biosensors for cancer markers diagnosis. Semin. Cell Dev. Biol. 20(1), 55–62 (2009).
2
De Angelis R, Sant M, Coleman MP et al. Cancer survival in Europe 1999–2007 by country and age: results of EUROCARE-5- A population-based study. Lancet Oncol. 15(1), 23–34 (2014).
8
Soper SA, Brown K, Ellington A et al. Point-of-care biosensor systems for cancer diagnostics/prognostics. Biosens. Bioelectron. 21(10), 1932–1942 (2006).
9
3
Ferlay J, Steliarova-Foucher E, Lortet-Tieulent J et al. Cancer incidence and mortality patterns in Europe: estimates for 40 countries in 2012. Eur. J. Cancer 49(6), 1374–1403 (2013).
D’orazio P. Biosensors in clinical chemistry - 2011 update. Clin. Chim. Acta 412(19–20), 1749–1761 (2011).
10
Henry NL, Hayes DF. Cancer biomarkers. Mol. Oncol. 6(2), 140–146 (2012).
11
Thariani R, Veenstra DL, Carlson JJ, Garrison LP, Ramsey S. Paying for personalized care: cancer biomarkers and
References Papers of special note have been highlighted as: • of interest; •• of considerable interest 1
4
3430
Sharma S, Kelly TK, Jones PA. Epigenetics in cancer. Carcinogenesis 31(1), 27–36 (2010).
Bioanalysis (2014) 6(24)
future science group
Affinity biosensors for tumor-marker analysis
comparative effectiveness. Mol. Oncol. 6(2), 260–266 (2012). 12
Gonzalez De Castro D, Clarke PA, Al-Lazikani B, Workman P. Personalized cancer medicine: molecular diagnostics, predictive biomarkers, and drug resistance. Clin. Pharmacol. Ther. 93(3), 252–259 (2013).
13
Hamburg MA, Collins FS. The path to personalized medicine. N. Engl. J. Med. 363(4), 301–304 (2010).
14
Paoletti C, Hayes DF. Molecular testing in breast cancer. Annu. Rev. Med. 65, 95–110 (2014).
15
Turner AP. Biosensors: sense and sensibility. Chem. Soc. Rev. 42(8), 3184–3196 (2013).
••
Provides excellent description of the state of art in biosensor technology.
16
Algar WR, Tavares AJ, Krull UJ. Beyond labels: areview of the application of quantum dots as integrated components of assays, bioprobes, and biosensors utilizing optical transduction. Anal. Chim. Acta 673(1), 1–25 (2010).
17
Roda A, Guardigli M. Analytical chemiluminescence and bioluminescence: latest achievements and new horizons. Anal. Bioanal. Chem. 402(1), 69–76 (2012).
18
Mariani S, Minunni M. Surface plasmon resonance applications in clinical analysis. Anal. Bioanal. Chem. 406(9–10), 2303–2323 (2014).
19
Chikkaveeraiah BV, Bhirde AA, Morgan NY, Eden HS, Chen X. Electrochemical immunosensors for detection of cancer protein biomarkers. ACS Nano 6(8), 6546–6561 (2012).
20
Ronkainen NJ, Halsall HB, Heineman WR. Electrochemical biosensors. Chem. Soc. Rev. 39(5), 1747–1763 (2010).
monolayers, camel antibodies and colloidal gold enhanced sandwich assays. Biosens. Bioelectron. 21(3), 483–490 (2005). 29
Campuzano S, Salema V, Moreno-Guzman M et al. Disposable amperometric magnetoimmunosensors using nanobodies as biorecognition element. Determination of fibrinogen in plasma. Biosens. Bioelectron. 52, 255–260 (2014).
30
Mascini M, Palchetti I, Tombelli S. Nucleic acid and peptide aptamers: fundamentals and bioanalytical aspects. Angew. Chem. Int. Ed. Engl. 51(6), 1316–1332 (2012).
31
Shu HW, Wen W, Xiong HY, Zhang XH, Wang SF. Novel electrochemical aptamer biosensor based on gold nanoparticles signal amplification for the detection of carcinoembryonic antigen. Electrochem. Commun. 37, 15–19 (2013).
32
Famulok M, Mayer G. Aptamer modules as sensors and detectors. Acc. Chem. Res. 44(12), 1349–1358 (2011).
33
Keefe AD, Pai S, Ellington A. Aptamers as therapeutics. Nat. Rev. Drug Discov. 9(7), 537–550 (2010).
34
Zhu G, Ye M, Donovan MJ, Song E, Zhao Z, Tan W. Nucleic acid aptamers: an emerging frontier in cancer therapy. Chem. Commun. 48(85), 10472–10480 (2012).
35
Ni X, Castanares M, Mukherjee A, Lupold SE. Nucleic acid aptamers: clinical applications and promising new horizons. Curr. Med. Chem. 18(27), 4206–4214 (2011).
36
Bossmann SH, Troyer DL. Point-of-care routine rapid screening: the future of cancer diagnosis? Expert Rev. Mol. Diagn. 13(2), 107–109 (2013).
37
Chang YM, Donovan MJ, Tan W. Using aptamers for cancer biomarker discovery. J. Nucleic Acids 2013, 817350 (2013).
38
Mayer G, Ahmed MS, Dolf A, Endl E, Knolle PA, Famulok M. Fluorescence-activated cell sorting for aptamer SELEX with cell mixtures. Nat. Protoc. 5(12), 1993–2004 (2010).
21
Swierczewska M, Liu G, Lee S, Chen X. High-sensitivity nanosensors for biomarker detection. Chem. Soc. Rev. 41(7), 2641–2655 (2012).
39
22
Perfezou M, Turner A, Merkoci A. Cancer detection using nanoparticle-based sensors. Chem. Soc. Rev. 41(7), 2606–2622 (2012).
Liu Q, Jin C, Wang Y et al. Aptamer-conjugated nanomaterials for specific cancer cell recognition and targeted cancer therapy. NPG Asia Mater. 6(4), e95 (2014).
40
Conroy PJ, Hearty S, Leonard P, O’kennedy RJ. Antibody production, design and use for biosensor-based applications. Semin. Cell Dev. Biol. 20(1), 10–26 (2009).
Liu G, Mao X, Phillips JA, Xu H, Tan W, Zeng L. Aptamer− nanoparticle strip biosensor for sensitive detection of cancer cells. Anal. Chem. 81(24), 10013–10018 (2009).
41
Kashefi-Kheyrabadi L, Mehrgardi MA, Wiechec E, Turner AP, Tiwari A. Ultrasensitive detection of human liver hepatocellular carcinoma cells using a label-free aptasensor. Anal. Chem., 86, 4956−4960 (2014).
42
Yan M, Sun G, Liu F et al. An aptasensor for sensitive detection of human breast cancer cells by using porous GO/ Au composites and porous PtFe alloy as effective sensing platform and signal amplification label. Anal. Chim. Acta 798, 33–39 (2013).
43
Liu F, Zhang Y, Yu J, Wang S, Ge S, Song X. Application of ZnO/graphene and S6 aptamers for sensitive photoelectrochemical detection of SK-BR-3 breast cancer cells based on a disposable indium tin oxide device. Biosens. Bioelectron. 51, 413–420 (2014).
44
Wu MS, Yuan DJ, Xu JJ, Chen HY. Sensitive electrochemiluminescence biosensor based on Au-ITO Hybrid bipolar electrode amplification system for cell surface protein detection. Anal. Chem. 85, 11960–11965 (2013).
23
24
Zeng X, Shen Z, Mernaugh R. Recombinant antibodies and their use in biosensors. Anal. Bioanal. Chem. 402(10), 3027–3038 (2012).
25
Keating J, Sankar G, Hyde TI, Kohara S, Ohara K. Elucidation of structure and nature of the PdO-Pd transformation using in situ PDF and XAS techniques. Phys. Chem. Chem. Phys 15(22), 8555–8565 (2013).
26
Flajnik MF, Deschacht N, Muyldermans S. A case of convergence: why did a simple alternative to canonical antibodies arise in sharks and camels? PLoS Biol. 9(8), e1001120 (2011).
27
Hassanzadeh-Ghassabeh G, Devoogdt N, De Pauw P, Vincke C, Muyldermans S. Nanobodies and their potential applications. Nanomedicine 8(6), 1013–1026 (2013).
28
Huang L, Reekmans G, Saerens D et al. Prostate-specific antigen immunosensing based on mixed self-assembled
future science group
Review
www.future-science.com
3431
Review Palchetti 45
Gronwall C, Stahl S. Engineered affinity proteins: generation and applications. J. Biotechnol. 140(3–4), 254–269 (2009).
46
Binz HK, Amstutz P, Pluckthun A. Engineering novel binding proteins from nonimmunoglobulin domains. Nat. Biotech. 23(10), 1257–1268 (2005).
47 48
62
Palchetti I, Marrazza G, Mascini M. Genosensing environmental pollution. In: Nucleic Acid Biosensors for Environmental Pollution Monitoring. Mascini M, Palchetti I (Eds). Royal Society of Chemistry, London UK, 34–60 (2011).
Deutscher SL. Phage display in molecular imaging and diagnosis of cancer. Chem. Rev. 110(5), 3196–3211 (2010).
63
Cosnier S, Mailley P. Recent advances in DNA sensors. Analyst 133(8), 984–991 (2008).
Castillo JJ, Svendsen WE, Rozlosnik N, Escobar P, Martinez F, Castillo-Leon J. Detection of cancer cells using a peptide nanotube-folic acid modified graphene electrode. Analyst 138(4), 1026–1031 (2013).
64
Sassolas A, Leca-Bouvier BD, Blum LJ. DNA biosensors and microarrays. Chem. Rev. 108(1), 109–139 (2008).
65
Lucarelli F, Tombelli S, Minunni M, Marrazza G, Mascini M. Electrochemical and piezoelectric DNA biosensors for hybridization detection. Anal. Chim. Acta 609(2), 139–159 (2008).
66
Karadeniz H, Kuralay F, Abaci S, Erdem A. The recent electrochemical biosensor technologies for monitoring of nucleic acid hybridization. Curr. Anal. Chem. 7(1), 63–70 (2011).
49
Chiriaco MS, Primiceri E, Monteduro AG et al. Towards pancreatic cancer diagnosis using EIS biochips. Lab Chip 13(4), 730–734 (2013).
50
Lee JW, Song J, Hwang MP, Lee KH. Nanoscale bacteriophage biosensors beyond phage display. Int. J. Nanomedicine 8, 3917–3925 (2013).
51
Yang L-MC, Tam PY, Murray BJ et al. Virus electrodes for universal biodetection. Anal. Chem. 78(10), 3265–3270 (2006).
67
Ricci F, Zari N, Caprio F et al. Surface chemistry effects on the performance of an electrochemical DNA sensor. Bioelectrochem 76(1–2), 208–213 (2009).
52
Palaniappan KK, Ramirez RM, Bajaj VS, Wemmer DE, Pines A, Francis MB. Molecular imaging of cancer cells using a bacteriophage-based 129Xe NMR biosensor. Angew. Chem. Int. Ed. Engl. 52(18), 4849–4853 (2013).
68
Laschi S, Palchetti I, Marrazza G, Mascini M. Enzymeamplified electrochemical hybridization assay based on PNA, LNA and DNA probe-modified micro-magnetic beads. Bioelectrochemistry 76(1–2), 214–220 (2009).
53
Mao C, Liu A, Cao B. Virus-based chemical and biological sensing. Angew. Chem. Int. Ed. Engl. 48(37), 6790–6810 (2009).
69
Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75(5), 843–854 (1993).
54
Whitcombe MJ, Chianella I, Larcombe L et al. The rational development of molecularly imprinted polymer-based sensors for protein detection. Chem. Soc. Rev. 40(3), 1547–1571 (2011).
70
Iorio MV, Croce CM. MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics: a comprehensive review. EMBO Mol. Med. 4(3), 143–159 (2012).
••
55
Fuchs Y, Soppera O, Haupt K. Photopolymerization and photostructuring of molecularly imprinted polymers for sensor applications: a review. Anal. Chim. Acta 717(0), 7–20 (2012).
An excellent review that describes different aspects of the role of microRNA in cancer.
71
Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell 136(2), 215–233 (2009).
Wang Y, Zhang Z, Jain V et al. Potentiometric sensors based on surface molecular imprinting: detection of cancer biomarkers and viruses. Sens. Actuators B-Chem. 146(1), 381–387 (2010).
72
Cissell K, Deo S. Trends in microRNA detection. Anal BioAnal. Chem. 394(4), 1109–1116 (2009).
73
Johnson BN, Mutharasan R. Biosensor-based microRNA detection: techniques, design, performance, and challenges. Analyst 139(7), 1576–1588 (2014).
74
Driskell JD, Tripp RA. Label-free SERS detection of microRNA based on affinity for an unmodified silver nanorod array substrate. Chem. Commun. 46(19), 3298–3300 (2010).
56
3432
methodology (IUPAC Technical Report). Pure Appl. Chem. 82(5), 1161–1187 (2010).
57
Viswanathan S, Rani C, Ribeiro S, Delerue-Matos C. Molecular imprinted nanoelectrodes for ultra sensitive detection of ovarian cancer marker. Biosens. Bioelectron. 33(1), 179–183 (2012).
58
Potapenko IO, Haakensen VD, Lüders T et al. Glycan gene expression signatures in normal and malignant breast tissue; possible role in diagnosis and progression. Mol. Oncol. 4(2), 98–118 (2010).
75
Wu Y, Kwak KJ, Agarwal K et al. Detection of extracellular RNAs in cancer and viral infection via tethered cationic lipoplex nanoparticles containing molecular beacons. Anal. Chem. 85(23), 11265–11274 (2013).
59
Cao J-T, Hao X-Y, Zhu Y-D, Sun K, Zhu J-J. Microfluidic platform for the evaluation of multi-glycan expressions on living cells using electrochemical impedance spectroscopy and optical microscope. Anal. Chem. 84(15), 6775–6782 (2012).
76
Campuzano S, Pedrero M, Pingarron JM. Electrochemical genosensors for the detection of cancer-related miRNAs. Anal. Bioanal. Chem. 406(1), 27–33 (2014).
77
Teo AKL, Lim CL, Gao Z. The development of electrochemical assays for microRNAs. Electrochim. Acta 126, 19–30 (2014).
78
Hamidi-Asl E, Palchetti I, Hasheminejad E, Mascini M. A review on the electrochemical biosensors for determination of microRNAs. Talanta 115, 74–83 (2013).
60
Wang Y, Qu K, Tang L et al. Nanomaterials in carbohydrate biosensors. Trends Analyt. Chem. 58, 54–70 (2014)
61
Labuda J, Brett AMO, Evtugyn G et al. Electrochemical nucleic acid-based biosensors: concepts, terms, and
Bioanalysis (2014) 6(24)
future science group
Affinity biosensors for tumor-marker analysis
79
Gao Z, Yang Z. Detection of MicroRNAs using electrocatalytic nanoparticle tags. Anal. Chem. 78(5), 1470–1477 (2006).
80
Gao Z, Yu YH. A microRNA biosensor based on direct chemical ligation and electrochemically amplified detection. Sens. Actuators B-Chem. 121(2), 552–559 (2007).
81
Gao Z, Yu YH. Direct labeling microRNA with an electrocatalytic moiety and its application in ultrasensitive microRNA assays. Biosens. Bioelectron. 22(6), 933–940 (2007).
82
Peng Y, Gao Z. Amplified detection of microRNA based on ruthenium oxide nanoparticle-initiated deposition of an insulating film. Anal. Chem. 83(3), 820–827 (2011).
83
Peng Y, Yi G, Gao Z. A highly sensitive microRNA biosensor based on ruthenium oxide nanoparticle-initiated polymerization of aniline. Chem. Commun. 46(48), 9131–9133 (2010).
84
85
95
Li L, Li W, Yang H et al. Sensitive origami dual-analyte electrochemical immunodevice based on polyaniline/ Au-paper electrode and multi-labeled 3D graphene sheets. Electrochim. Acta 120, 102–109 (2014).
96
Malhotra R, Patel V, Chikkaveeraiah BV et al. Ultrasensitive detection of cancer biomarkers in the clinic by use of a nanostructured microfluidic array. Anal. Chem. 84(14), 6249–6255 (2012).
97
Escobedo C, Chou YW, Rahman M et al. Quantification of ovarian cancer markers with integrated microfluidic concentration gradient and imaging nanohole surface plasmon resonance. Analyst 138(5), 1450–1458 (2013).
98
Gaster RS, Hall DA, Nielsen CH et al. Matrix-insensitive protein assays push the limits of biosensors in medicine. Nat. Med. 15(11), 1327–1332 (2009).
99
Rusling JF. Steps along the road to electrochemical devices for early cancer diagnosis. Bioanalysis 2(5), 847–850 (2010).
PöHlmann C, Sprinzl M. Electrochemical detection of microRNAs via gap hybridization assay. Anal. Chem. 82(11), 4434–4440 (2010).
100 Conway JR, Carragher NO, Timpson P. Developments
Gao Z. A highly sensitive electrochemical assay for microRNA expression profiling. Analyst 137(7), 1674–1679 (2012).
101 Labuda J, Ovádeková R, Galandová J. DNA-based
in preclinical cancer imaging: innovating the discovery of therapeutics. Nat. Rev. Cancer 14(5), 314–328 (2014). biosensor for the detection of strong damage to DNA by the quinazoline derivative as a potential anticancer agent. Microchim. Acta. 164(3–4), 371–377 (2008).
86
Gao Z, Peng Y. A highly sensitive and specific biosensor for ligation- and PCR-free detection of MicroRNAs. Biosens. Bioelectron. 26(9), 3768–3773 (2011).
87
Yin H, Zhou Y, Chen C, Zhu L, Ai S. An electrochemical signal ‘off-on’ sensing platform for microRNA detection. Analyst 137(6), 1389–1395 (2012).
88
Bettazzi F, Hamid-Asl E, Esposito CL et al. Electrochemical detection of miRNA-222 by use of a magnetic bead-based bioassay. Anal. Bioanal. Chem. 405(2–3), 1025–1034 (2013).
103 Kraemer S, Vaught JD, Bock C et al. From SOMAmer-based
Yang H, Hui A, Pampalakis G et al. Direct, electronic microRNA detection for the rapid determination of differential expression profiles. Angew. Chem. Int. Ed. Engl. 48(45), 8461–8464 (2009).
104 Van Simaeys D, Turek D, Champanhac C et al. Identification
89
90
Fan Y, Chen X, Trigg AD, Tung C-H, Kong J, Gao Z. Detection of microRNAs using target-guided formation of conducting polymer nanowires in nanogaps. J. Am. Chem. Soc. 129(17), 5437–5443 (2007).
91
Zhang G-J, Chua JH, Chee R-E, Agarwal A, Wong SM. Label-free direct detection of MiRNAs with silicon nanowire biosensors. Biosens. Bioelectron. 24(8), 2504–2508 (2009).
92
Labib M, Khan N, Ghobadloo SM, Cheng J, Pezacki JP, Berezovski MV. Three-mode electrochemical sensing of ultralow microRNA levels. J. Am. Chem. Soc. 135(8), 3027–3038 (2013).
93
Choi S, Goryll M, Sin LYM, Wong PK, Chae J. Microfluidic-based biosensors toward point-of-care detection of nucleic acids and proteins. Microfluidics Nanofluidics 10(2), 231–247 (2010).
94
Rusling JF, Kumar CV, Gutkind JS, Patel V. Measurement of biomarker proteins for point-of-care early detection and monitoring of cancer. Analyst 135(10), 2496–2511 (2010).
•
Description of different bioassays for the analysis of protein biomarker with potential for multiplexed point-of-care applications.
future science group
Review
102 Corduneanu O, Chiorcea-Paquim AM, Diculescu V, Fiuza
SM, Marques MPM, Oliveira-Brett AM. DNA interaction with palladium chelates of biogenic polyamines using atomic force microscopy and voltammetric characterization. Anal. Chem. 82(4), 1245–1252 (2010). biomarker discovery to diagnostic and clinical applications: a SOMAmer-based, streamlined multiplex proteomic assay. PLoS ONE 6(10), e26332 (2011). of cell membrane protein stress-induced phosphoprotein 1 as a potential ovarian cancer biomarker using aptamers selected by cell systematic evolution of ligands by exponential enrichment. Anal. Chem. 86(9), 4521–4527 (2014). 105 Altintas Z, Uludag Y, Gurbuz Y, Tothill IE. Surface plasmon
resonance based immunosensor for the detection of the cancer biomarker carcinoembryonic antigen. Talanta 86, 377–383 (2011). 106 Springer T, Homola J. Biofunctionalized gold nanoparticles
for SPR-biosensor-based detection of CEA in blood plasma. Anal. Bioanal. Chem. 404(10), 2869–2875 (2012). 107 Cai Y, Li H, Li Y et al. Electrochemical immunoassay for
carcinoembryonic antigen based on signal amplification strategy of nanotubular mesoporous PdCu alloy. Biosens. Bioelectron. 36(1), 6–11 (2012). 108 Cao X, Wang N, Jia S, Guo L, Li K. Bimetallic AuPt
nanochains: Synthesis and their application in electrochemical immunosensor for the detection of carcinoembryonic antigen. Biosens. Bioelectron. 39(1), 226–230 (2013). 109 Ge Y, Wu J, Ju H, Wu S. Ultrasensitive enzyme-free
electrochemical immunosensor based on hybridization chain reaction triggered double strand DNA@Au nanoparticle tag. Talanta 120, 218–223 (2014).
www.future-science.com
3433
Review Palchetti 110 Jin B, Wang P, Mao H et al. Multi-nanomaterial
electrochemical biosensor based on label-free graphene for detecting cancer biomarkers. Biosens. Bioelectron. 55, 464–469 (2014). 111 Laboria N, Fragoso A, Kemmner W et al. Amperometric
immunosensor for carcinoembryonic antigen in colon cancer samples based on monolayers of dendritic bipodal scaffolds. Anal. Chem. 82(5), 1712–1719 (2010). 112 Lai W, Zhuang J, Tang J, Chen G, Tang D. One-step
electrochemical immunosensing for simultaneous detection of two biomarkers using thionine and ferrocene as distinguishable signal tags. Microchim. Acta 178(3–4), 357–365 (2012). 113 Li J, Gao H, Chen Z, Wei X, Yang CF. An electrochemical
immunosensor for carcinoembryonic antigen enhanced by self-assembled nanogold coatings on magnetic particles. Anal. Chim. Acta 665(1), 98–104 (2010). 114 Liu Z, Ma Z. Fabrication of an ultrasensitive electrochemical
immunosensor for CEA based on conducting long-chain polythiols. Biosens. Bioelectron. 46, 1–7 (2013). 115 Lu W, Ge J, Tao L, Cao X, Dong J, Qian W. Large-scale
synthesis of ultrathin Au-Pt nanowires assembled on thionine/graphene with high conductivity and sensitivity for electrochemical immunosensor. Electrochim. Acta 130, 335–343 (2014). 116 Norouzi P, Gupta VK, Faridbod F, Pirali-Hamedani
M, Larijani B, Ganjali MR. Carcinoembryonic antigen admittance biosensor based on Au and ZnO nanoparticles using FFT admittance voltammetry. Anal. Chem. 83(5), 1564–1570 (2011). 117 Zhong Z, Wu W, Wang D et al. Nanogold-enwrapped
graphene nanocomposites as trace labels for sensitivity enhancement of electrochemical immunosensors in clinical immunoassays: carcinoembryonic antigen as a model. Biosens. Bioelectron. 25(10), 2379–2383 (2010). 118 Lv P, Min L, Yuan R, Chai Y, Chen S. A novel
immunosensor for carcinoembryonic antigen based on poly(diallyldimethylammonium chloride) protected prussian blue nanoparticles and double-layer nanometer-sized gold particles. Microchim. Acta 171(3–4), 297–304 (2010). 119 Hu C, Zheng J, Su X, Wang J, Wu W, Hu S. Ultrasensitive
all-carbon photoelectrochemical bioprobes for zeptomole immunosensing of tumor markers by an inexpensive visible laser light. Anal. Chem. 85(21), 10612–10619 (2013). 120 Ji J, He L, Shen Y et al. High-efficient energy funneling
based on electrochemiluminescence resonance energy transfer in graded-gap quantum dots bilayers for immunoassay. Anal. Chem. 86(7), 3284–3290 (2014). 121 Lei J, Lei C, Wang T, Yang Z, Zhou Y. Detection of
targeted carcinoembryonic antigens using a micro-fluxgatebased biosensor. Appl. Phys. Lett. 103(20), 203705–203709 (2013). 122 Malic L, Sandros MG, Tabrizian M. Designed biointerface
using near-infrared quantum dots for ultrasensitive surface plasmon resonance imaging biosensors. Anal. Chem. 83(13), 5222–5229 (2011). 123 Li H, Wei Q, He J et al. Electrochemical immunosensors
for cancer biomarker with signal amplification based on
3434
Bioanalysis (2014) 6(24)
ferrocene functionalized iron oxide nanoparticles. Biosens. Bioelectron. 26(8), 3590–3595 (2011). 124 Liu J, Zhou H, Xu JJ, Chen HY. Dual-biomarker-based
logic-controlled electrochemical diagnosis for prostate cancers. Electrochem. Commun. 32, 27–30 (2013). 125 Wan Y, Deng W, Su Y et al. Carbon nanotube-based
ultrasensitive multiplexing electrochemical immunosensor for cancer biomarkers. Biosens. Bioelectron. 30(1), 93–99 (2011). 126 Zani A, Laschi S, Mascini M, Marrazza G. A new
electrochemical multiplexed assay for PSA cancer marker detection. Electroanalysis 23(1), 91–99 (2011). 127 Yang M, Javadi A, Li H, Gong S. Ultrasensitive
immunosensor for the detection of cancer biomarker based on graphene sheet. Biosens. Bioelectron. 26(2), 560–565 (2010). 128 Kim D-J, Sohn IY, Jung J-H, Yoon OJ, Lee NE, Park J-S.
Reduced graphene oxide field-effect transistor for labelfree femtomolar protein detection. Biosens. Bioelectron. 41, 621–626 (2013). 129 Zhou M, Yang M, Zhou F. Paper based colorimetric
biosensing platform utilizing cross-linked siloxane as probe. Biosens. Bioelectron. 55, 39–43 (2014). 130 Lee H-J, Lee J-H, Moon H-S et al. A planar split-ring
resonator-based microwave biosensor for label-free detection of biomolecules. Sens. Actuators B-Chem. 169, 26–31 (2012). 131 Su L, Zou L, Fong C-C et al. Detection of cancer biomarkers
by piezoelectric biosensor using PZT ceramic resonator as the transducer. Biosens. Bioelectron. 46, 155–161 (2013). 132 Uludag Y, Tothill IE. Cancer biomarker detection in serum
samples using surface plasmon resonance and quartz crystal microbalance sensors with nanoparticle signal amplification. Anal. Chem. 84(14), 5898–5904 (2012). 133 Xu S, Liu Y, Wang T, Li J. Positive potential operation of a
cathodic electrogenerated chemiluminescence immunosensor based on luminol and graphene for cancer biomarker detection. Anal. Chem. 83(10), 3817–3823 (2011). 134 Tran HV, Piro B, Reisberg S, Anquetin G, Duc HT, Pham
MC. An innovative strategy for direct electrochemical detection of microRNA biomarkers. Anal. Bioanal. Chem. 406(4), 1241–1244 (2014). 135 Ren Y, Deng H, Shen W, Gao Z. A highly sensitive and
selective electrochemical biosensor for direct detection of microRNAs in serum. Anal. Chem. 85(9), 4784–4789 (2013). 136 Wu X, Chai Y, Yuan R, Su H, Han J. A novel label-free
electrochemical microRNA biosensor using Pd nanoparticles as enhancer and linker. Analyst 138(4), 1060–1066 (2013). 137 Gao Z, Deng H, Shen W, Ren Y. A label-free biosensor for
electrochemical detection of femtomolar microRNAs. Anal. Chem. 85(3), 1624–1630 (2013). 138 Xia N, Zhang L, Wang G, Feng Q, Liu L. Label-free and
sensitive strategy for microRNAs detection based on the formation of boronate ester bonds and the dual-amplification of gold nanoparticles. Biosens. Bioelectron. 47, 461–466 (2013). 139 Shen W, Deng H, Ren Y, Gao Z. A label-free microRNA
biosensor based on DNAzyme-catalyzed and microRNAguided formation of a thin insulating polymer film. Biosens. Bioelectron. 44, 171–176 (2013).
future science group
Affinity biosensors for tumor-marker analysis
140 Li F, Peng J, Wang J et al. Carbon nanotube-based label-
free electrochemical biosensor for sensitive detection of miRNA-24. Biosens. Bioelectron. 54, 158–164 (2014). 141 Erdem A, Congur G. Label-free voltammetric detection
of MicroRNAs at multi-channel screen printed array of electrodes comparison to graphite sensors. Talanta 118, 7–13 (2014). 142 Cai Z, Song Y, Wu Y, Zhu Z, Yang CJ, Chen X. An
electrochemical sensor based on label-free functional allosteric molecular beacons for detection target DNA/ miRNA. Biosens. Bioelectron. 41, 783–788 (2013). 143 Meng X, Zhou Y, Liang Q et al. Electrochemical
determination of microRNA-21 based on bio bar code and hemin/G-quadruplet DNAenzyme. Analyst 138(12), 3409–3415 (2013). 144 Kilic T, Nur Topkaya S, Ozsoz M. A new insight into
electrochemical microRNA detection: a molecular caliper, p19 protein. Biosens. Bioelectron. 48, 165–171 (2013). 145 Hong CY, Chen X, Liu T et al. Ultrasensitive electrochemical
detection of cancer-associated circulating microRNA in serum samples based on DNA concatamers. Biosens. Bioelectron. 50, 132–136 (2013). 146 Yan YR, Zhao D, Yuan TX et al. A Simple and Highly
Sensitive Electrochemical Biosensor for microRNA Detection
future science group
Review
Using Target-Assisted Isothermal Exponential Amplification Reaction. Electroanal. 25(10), 2354–2359 (2013). 147 Lin M, Wen Y, Li L et al. Target-responsive, DNA
nanostructure-based E-DNA sensor for microRNA analysis. Anal. Chem. 86(5), 2285–2288 (2014). 148 Ge Z, Lin M, Wang P et al. Hybridization chain reaction
amplification of microRNA detection with a tetrahedral DNA nanostructure-based electrochemical biosensor. Anal. Chem. 86(4), 2124–2130 (2014). 149 Bartosik M, Hrstka R, Palecek E, Vojtesek B. Magnetic
bead-based hybridization assay for electrochemical detection of microRNA. Anal. Chim. Acta 813, 35–40 (2014). 150 Liu L, Xia N, Liu H et al. Highly sensitive and label-free
electrochemical detection of microRNAs based on triple signal amplification of multifunctional gold nanoparticles, enzymes and redox-cycling reaction. Biosens. Bioelectron. 53, 399–405 (2014). 151 National Cancer institute SEER program
http://seer.cancer.gov/statfacts/html/all.html 152 National Cancer institute
www.cancer.gov 153 National Cancer institute
www.cancer.gov/cancertopics/factsheet/detection/tumormarkers
www.future-science.com
3435